Cluster: HRGMv2_2909_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2909
- CGC Family ID: CGCFAM_00045
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_305 | 314880 | 316091 | + | 3.A.1.1.16 |
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_306 | 316105 | 316995 | + | 3.A.1.1.2 |
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_307 | 317000 | 317854 | + | 3.A.1.1.6 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_308 | 317873 | 319606 | + | CBM34 | GH13_20 |
| TF | HRGMv2_2909_1 | HRGMv2_2909_1_309 | 319603 | 320613 | + | LacI |
| TF | HRGMv2_2909_1 | HRGMv2_2909_1_310 | 320727 | 321395 | - | GntR |
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_311 | 321589 | 323010 | - | 2.A.118.1.3 |
Gene ID: HRGMv2_2909_1_305
Type: TC
Location: 314880 - 316091 (+)
Type: TC
Location: 314880 - 316091 (+)
Gene ID: HRGMv2_2909_1_306
Type: TC
Location: 316105 - 316995 (+)
Type: TC
Location: 316105 - 316995 (+)
Gene ID: HRGMv2_2909_1_307
Type: TC
Location: 317000 - 317854 (+)
Type: TC
Location: 317000 - 317854 (+)
Gene ID: HRGMv2_2909_1_308
Type: CAZyme
Location: 317873 - 319606 (+)
Type: CAZyme
Location: 317873 - 319606 (+)
Gene ID: HRGMv2_2909_1_309
Type: TF
Location: 319603 - 320613 (+)
Type: TF
Location: 319603 - 320613 (+)
Gene ID: HRGMv2_2909_1_310
Type: TF
Location: 320727 - 321395 (-)
Type: TF
Location: 320727 - 321395 (-)
Gene ID: HRGMv2_2909_1_311
Type: TC
Location: 321589 - 323010 (-)
Type: TC
Location: 321589 - 323010 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.