Cluster: HRGMv2_2909_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2909
- CGC Family ID: CGCFAM_01348
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_290 | 298213 | 298935 | + | 1.A.14.2.2 |
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_291 | 299206 | 300063 | + | 3.A.1.3.15 |
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_292 | 300203 | 300931 | + | 3.A.1.3.14 |
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_293 | 300918 | 301640 | + | 3.A.1.3.25 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_294 | 301540 | 302976 | - | GT2 |
Gene ID: HRGMv2_2909_1_290
Type: TC
Location: 298213 - 298935 (+)
Type: TC
Location: 298213 - 298935 (+)
Gene ID: HRGMv2_2909_1_291
Type: TC
Location: 299206 - 300063 (+)
Type: TC
Location: 299206 - 300063 (+)
Gene ID: HRGMv2_2909_1_292
Type: TC
Location: 300203 - 300931 (+)
Type: TC
Location: 300203 - 300931 (+)
Gene ID: HRGMv2_2909_1_293
Type: TC
Location: 300918 - 301640 (+)
Type: TC
Location: 300918 - 301640 (+)
Gene ID: HRGMv2_2909_1_294
Type: CAZyme
Location: 301540 - 302976 (-)
Type: CAZyme
Location: 301540 - 302976 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.