Cluster: HRGMv2_2909_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2909
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2909_22 | HRGMv2_2909_22_21 | 23918 | 25462 | - | 2.A.16.2.2 |
| pfam | HRGMv2_2909_22 | HRGMv2_2909_22_22 | 25672 | 26772 | + | N6_N4_Mtase |
| NULL(UNKNOWN) | HRGMv2_2909_22 | HRGMv2_2909_22_23 | 26847 | 27659 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2909_22 | HRGMv2_2909_22_24 | 27953 | 29137 | - | 2.A.1.7.13 |
| pfam | HRGMv2_2909_22 | HRGMv2_2909_22_25 | 29148 | 30671 | - | FGGY_N | FGGY_C |
| NULL(UNKNOWN) | HRGMv2_2909_22 | HRGMv2_2909_22_26 | 30775 | 32094 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2909_22 | HRGMv2_2909_22_27 | 32136 | 34184 | - | GH31_4 |
Gene ID: HRGMv2_2909_22_21
Type: TC
Location: 23918 - 25462 (-)
Type: TC
Location: 23918 - 25462 (-)
Gene ID: HRGMv2_2909_22_22
Type: pfam
Location: 25672 - 26772 (+)
Type: pfam
Location: 25672 - 26772 (+)
Gene ID: HRGMv2_2909_22_23
Type:
Location: 26847 - 27659 (-)
Type:
Location: 26847 - 27659 (-)
Gene ID: HRGMv2_2909_22_24
Type: TC
Location: 27953 - 29137 (-)
Type: TC
Location: 27953 - 29137 (-)
Gene ID: HRGMv2_2909_22_25
Type: pfam
Location: 29148 - 30671 (-)
Type: pfam
Location: 29148 - 30671 (-)
Gene ID: HRGMv2_2909_22_26
Type:
Location: 30775 - 32094 (-)
Type:
Location: 30775 - 32094 (-)
Gene ID: HRGMv2_2909_22_27
Type: CAZyme
Location: 32136 - 34184 (-)
Type: CAZyme
Location: 32136 - 34184 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.