dbCAN Logo

Cluster: HRGMv2_2909_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2909_17 HRGMv2_2909_17_45 48495 49235 - 3.A.1.4.6
TC HRGMv2_2909_17 HRGMv2_2909_17_46 49232 51088 - 3.A.3.6.10
STP HRGMv2_2909_17 HRGMv2_2909_17_47 51111 51329 - HMA
TF HRGMv2_2909_17 HRGMv2_2909_17_48 51375 51737 - HTH_5
TC HRGMv2_2909_17 HRGMv2_2909_17_49 52019 53362 + 2.A.38.4.1
TC HRGMv2_2909_17 HRGMv2_2909_17_50 53390 54037 + 2.A.38.4.6
pfam HRGMv2_2909_17 HRGMv2_2909_17_51 54123 55097 - NA37
pfam HRGMv2_2909_17 HRGMv2_2909_17_52 55367 56677 - RmuC
CAZyme HRGMv2_2909_17 HRGMv2_2909_17_53 56780 57631 + CE4
Gene ID: HRGMv2_2909_17_45
Type: TC
Location: 48495 - 49235 (-)
Gene ID: HRGMv2_2909_17_46
Type: TC
Location: 49232 - 51088 (-)
Gene ID: HRGMv2_2909_17_47
Type: STP
Location: 51111 - 51329 (-)
Gene ID: HRGMv2_2909_17_48
Type: TF
Location: 51375 - 51737 (-)
Gene ID: HRGMv2_2909_17_49
Type: TC
Location: 52019 - 53362 (+)
Gene ID: HRGMv2_2909_17_50
Type: TC
Location: 53390 - 54037 (+)
Gene ID: HRGMv2_2909_17_51
Type: pfam
Location: 54123 - 55097 (-)
Gene ID: HRGMv2_2909_17_52
Type: pfam
Location: 55367 - 56677 (-)
Gene ID: HRGMv2_2909_17_53
Type: CAZyme
Location: 56780 - 57631 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger_A
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List