Cluster: HRGMv2_2909_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2909
- CGC Family ID: CGCFAM_00008
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_269 | 273163 | 273963 | + | 3.A.1.103.6 |
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_270 | 273975 | 274718 | + | 3.A.1.103.6 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_271 | 274838 | 276709 | + | GT2 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_272 | 276746 | 278614 | + | GT2 | GT2 |
Gene ID: HRGMv2_2909_1_269
Type: TC
Location: 273163 - 273963 (+)
Type: TC
Location: 273163 - 273963 (+)
Gene ID: HRGMv2_2909_1_270
Type: TC
Location: 273975 - 274718 (+)
Type: TC
Location: 273975 - 274718 (+)
Gene ID: HRGMv2_2909_1_271
Type: CAZyme
Location: 274838 - 276709 (+)
Type: CAZyme
Location: 274838 - 276709 (+)
Gene ID: HRGMv2_2909_1_272
Type: CAZyme
Location: 276746 - 278614 (+)
Type: CAZyme
Location: 276746 - 278614 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.