Cluster: HRGMv2_2909_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2909
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2909_13 | HRGMv2_2909_13_49 | 57889 | 59232 | - | 2.A.66.1.29 |
| TC | HRGMv2_2909_13 | HRGMv2_2909_13_50 | 59438 | 60244 | - | 3.A.1.34.1 |
| TC | HRGMv2_2909_13 | HRGMv2_2909_13_51 | 60244 | 61185 | - | 3.A.1.34.1 |
| pfam | HRGMv2_2909_13 | HRGMv2_2909_13_52 | 61252 | 62259 | - | ABC_sub_bind |
| pfam | HRGMv2_2909_13 | HRGMv2_2909_13_53 | 62907 | 64064 | + | FKBP_C | Trigger_C |
| CAZyme | HRGMv2_2909_13 | HRGMv2_2909_13_54 | 64177 | 66501 | - | GH31_3 |
Gene ID: HRGMv2_2909_13_49
Type: TC
Location: 57889 - 59232 (-)
Type: TC
Location: 57889 - 59232 (-)
Gene ID: HRGMv2_2909_13_50
Type: TC
Location: 59438 - 60244 (-)
Type: TC
Location: 59438 - 60244 (-)
Gene ID: HRGMv2_2909_13_51
Type: TC
Location: 60244 - 61185 (-)
Type: TC
Location: 60244 - 61185 (-)
Gene ID: HRGMv2_2909_13_52
Type: pfam
Location: 61252 - 62259 (-)
Type: pfam
Location: 61252 - 62259 (-)
Gene ID: HRGMv2_2909_13_53
Type: pfam
Location: 62907 - 64064 (+)
Type: pfam
Location: 62907 - 64064 (+)
Gene ID: HRGMv2_2909_13_54
Type: CAZyme
Location: 64177 - 66501 (-)
Type: CAZyme
Location: 64177 - 66501 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2909_13_52 | vegetarian > vegan | 1.23147 | 0.00861 |