Cluster: HRGMv2_2909_CGC2
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_2909
- CGC Family ID: CGCFAM_00073
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_237 | 239518 | 240510 | - | GT100 |
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_238 | 240507 | 241805 | - | 3.A.1.103.5 |
| TC | HRGMv2_2909_1 | HRGMv2_2909_1_239 | 241819 | 242694 | - | 3.A.1.103.5 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_240 | 243862 | 244986 | - | GT2 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_241 | 244964 | 246094 | - | GT4 |
| STP | HRGMv2_2909_1 | HRGMv2_2909_1_242 | 246212 | 247303 | - | Aminotran_1_2 |
| pfam | HRGMv2_2909_1 | HRGMv2_2909_1_243 | 247300 | 247713 | - | FdtA |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_244 | 247778 | 248731 | - | GT2 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_245 | 248724 | 249734 | - | GT2 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_246 | 249749 | 250777 | - | GT2 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_247 | 250774 | 251727 | - | GT2 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_248 | 251730 | 252974 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_2909_1 | HRGMv2_2909_1_249 | 252971 | 254236 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_250 | 254255 | 255226 | - | GT2 |
| CAZyme | HRGMv2_2909_1 | HRGMv2_2909_1_251 | 255223 | 256329 | - | GT4 |
Gene ID: HRGMv2_2909_1_237
Type: CAZyme
Location: 239518 - 240510 (-)
Type: CAZyme
Location: 239518 - 240510 (-)
Gene ID: HRGMv2_2909_1_238
Type: TC
Location: 240507 - 241805 (-)
Type: TC
Location: 240507 - 241805 (-)
Gene ID: HRGMv2_2909_1_239
Type: TC
Location: 241819 - 242694 (-)
Type: TC
Location: 241819 - 242694 (-)
Gene ID: HRGMv2_2909_1_240
Type: CAZyme
Location: 243862 - 244986 (-)
Type: CAZyme
Location: 243862 - 244986 (-)
Gene ID: HRGMv2_2909_1_241
Type: CAZyme
Location: 244964 - 246094 (-)
Type: CAZyme
Location: 244964 - 246094 (-)
Gene ID: HRGMv2_2909_1_242
Type: STP
Location: 246212 - 247303 (-)
Type: STP
Location: 246212 - 247303 (-)
Gene ID: HRGMv2_2909_1_243
Type: pfam
Location: 247300 - 247713 (-)
Type: pfam
Location: 247300 - 247713 (-)
Gene ID: HRGMv2_2909_1_244
Type: CAZyme
Location: 247778 - 248731 (-)
Type: CAZyme
Location: 247778 - 248731 (-)
Gene ID: HRGMv2_2909_1_245
Type: CAZyme
Location: 248724 - 249734 (-)
Type: CAZyme
Location: 248724 - 249734 (-)
Gene ID: HRGMv2_2909_1_246
Type: CAZyme
Location: 249749 - 250777 (-)
Type: CAZyme
Location: 249749 - 250777 (-)
Gene ID: HRGMv2_2909_1_247
Type: CAZyme
Location: 250774 - 251727 (-)
Type: CAZyme
Location: 250774 - 251727 (-)
Gene ID: HRGMv2_2909_1_248
Type: CAZyme
Location: 251730 - 252974 (-)
Type: CAZyme
Location: 251730 - 252974 (-)
Gene ID: HRGMv2_2909_1_249
Type:
Location: 252971 - 254236 (-)
Type:
Location: 252971 - 254236 (-)
Gene ID: HRGMv2_2909_1_250
Type: CAZyme
Location: 254255 - 255226 (-)
Type: CAZyme
Location: 254255 - 255226 (-)
Gene ID: HRGMv2_2909_1_251
Type: CAZyme
Location: 255223 - 256329 (-)
Type: CAZyme
Location: 255223 - 256329 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.