Cluster: HRGMv2_2909_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2909
- CGC Family ID: CGCFAM_06184
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2909_9 | HRGMv2_2909_9_50 | 59034 | 59795 | - | 3.A.1.7.5 |
| TC | HRGMv2_2909_9 | HRGMv2_2909_9_51 | 59792 | 60655 | - | 3.A.1.7.5 |
| TC | HRGMv2_2909_9 | HRGMv2_2909_9_52 | 60652 | 61539 | - | 3.A.1.7.5 |
| STP | HRGMv2_2909_9 | HRGMv2_2909_9_53 | 61610 | 62482 | - | LysR_substrate |
| NULL(UNKNOWN) | HRGMv2_2909_9 | HRGMv2_2909_9_54 | 62744 | 63040 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2909_9 | HRGMv2_2909_9_55 | 63490 | 65886 | + | GH3 |
| CAZyme | HRGMv2_2909_9 | HRGMv2_2909_9_56 | 65997 | 67748 | - | GH3 |
Gene ID: HRGMv2_2909_9_50
Type: TC
Location: 59034 - 59795 (-)
Type: TC
Location: 59034 - 59795 (-)
Gene ID: HRGMv2_2909_9_51
Type: TC
Location: 59792 - 60655 (-)
Type: TC
Location: 59792 - 60655 (-)
Gene ID: HRGMv2_2909_9_52
Type: TC
Location: 60652 - 61539 (-)
Type: TC
Location: 60652 - 61539 (-)
Gene ID: HRGMv2_2909_9_53
Type: STP
Location: 61610 - 62482 (-)
Type: STP
Location: 61610 - 62482 (-)
Gene ID: HRGMv2_2909_9_54
Type:
Location: 62744 - 63040 (+)
Type:
Location: 62744 - 63040 (+)
Gene ID: HRGMv2_2909_9_55
Type: CAZyme
Location: 63490 - 65886 (+)
Type: CAZyme
Location: 63490 - 65886 (+)
Gene ID: HRGMv2_2909_9_56
Type: CAZyme
Location: 65997 - 67748 (-)
Type: CAZyme
Location: 65997 - 67748 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.