Cluster: HRGMv2_2909_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2909
- CGC Family ID: CGCFAM_07771
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2909_7 | HRGMv2_2909_7_51 | 53685 | 54500 | - | GT2 |
| pfam | HRGMv2_2909_7 | HRGMv2_2909_7_52 | 54706 | 55515 | + | PNP_UDP_1 |
| pfam | HRGMv2_2909_7 | HRGMv2_2909_7_53 | 55530 | 56195 | + | Hydrolase | HAD | Hydrolase_like | HAD_2 |
| TC | HRGMv2_2909_7 | HRGMv2_2909_7_54 | 56210 | 57073 | + | 3.A.1.26.7 |
| TC | HRGMv2_2909_7 | HRGMv2_2909_7_55 | 57066 | 57875 | + | 3.A.1.33.1 |
| TC | HRGMv2_2909_7 | HRGMv2_2909_7_56 | 57891 | 58475 | + | 3.A.1.28.1 |
| TC | HRGMv2_2909_7 | HRGMv2_2909_7_57 | 58510 | 59298 | + | 3.A.1.33.1 |
Gene ID: HRGMv2_2909_7_51
Type: CAZyme
Location: 53685 - 54500 (-)
Type: CAZyme
Location: 53685 - 54500 (-)
Gene ID: HRGMv2_2909_7_52
Type: pfam
Location: 54706 - 55515 (+)
Type: pfam
Location: 54706 - 55515 (+)
Gene ID: HRGMv2_2909_7_53
Type: pfam
Location: 55530 - 56195 (+)
Type: pfam
Location: 55530 - 56195 (+)
Gene ID: HRGMv2_2909_7_54
Type: TC
Location: 56210 - 57073 (+)
Type: TC
Location: 56210 - 57073 (+)
Gene ID: HRGMv2_2909_7_55
Type: TC
Location: 57066 - 57875 (+)
Type: TC
Location: 57066 - 57875 (+)
Gene ID: HRGMv2_2909_7_56
Type: TC
Location: 57891 - 58475 (+)
Type: TC
Location: 57891 - 58475 (+)
Gene ID: HRGMv2_2909_7_57
Type: TC
Location: 58510 - 59298 (+)
Type: TC
Location: 58510 - 59298 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.