Cluster: HRGMv2_2909_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2909
- CGC Family ID: CGCFAM_04207
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2909_3 | HRGMv2_2909_3_72 | 83332 | 84234 | + | 3.A.1.1.20 |
| TC | HRGMv2_2909_3 | HRGMv2_2909_3_73 | 84224 | 85117 | + | 3.A.1.1.34 |
| pfam | HRGMv2_2909_3 | HRGMv2_2909_3_74 | 85131 | 85805 | + | Ribul_P_3_epim |
| pfam | HRGMv2_2909_3 | HRGMv2_2909_3_75 | 85820 | 86299 | + | LacAB_rpiB |
| CAZyme | HRGMv2_2909_3 | HRGMv2_2909_3_76 | 86283 | 88985 | + | GH3 |
Gene ID: HRGMv2_2909_3_72
Type: TC
Location: 83332 - 84234 (+)
Type: TC
Location: 83332 - 84234 (+)
Gene ID: HRGMv2_2909_3_73
Type: TC
Location: 84224 - 85117 (+)
Type: TC
Location: 84224 - 85117 (+)
Gene ID: HRGMv2_2909_3_74
Type: pfam
Location: 85131 - 85805 (+)
Type: pfam
Location: 85131 - 85805 (+)
Gene ID: HRGMv2_2909_3_75
Type: pfam
Location: 85820 - 86299 (+)
Type: pfam
Location: 85820 - 86299 (+)
Gene ID: HRGMv2_2909_3_76
Type: CAZyme
Location: 86283 - 88985 (+)
Type: CAZyme
Location: 86283 - 88985 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.