Cluster: HRGMv2_2909_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2909
- CGC Family ID: CGCFAM_00430
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2909_2 | HRGMv2_2909_2_212 | 232049 | 232978 | + | 3.A.1.1.20 |
| TC | HRGMv2_2909_2 | HRGMv2_2909_2_213 | 232995 | 233858 | + | 3.A.1.1.34 |
| pfam | HRGMv2_2909_2 | HRGMv2_2909_2_214 | 233855 | 235066 | + | AnmK |
| pfam | HRGMv2_2909_2 | HRGMv2_2909_2_215 | 235063 | 236043 | + | Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_10 |
| CAZyme | HRGMv2_2909_2 | HRGMv2_2909_2_216 | 236106 | 236795 | + | CE14 |
| CAZyme | HRGMv2_2909_2 | HRGMv2_2909_2_217 | 236812 | 237969 | + | GH171 |
| CAZyme | HRGMv2_2909_2 | HRGMv2_2909_2_218 | 237986 | 239518 | + | GH3 |
Gene ID: HRGMv2_2909_2_212
Type: TC
Location: 232049 - 232978 (+)
Type: TC
Location: 232049 - 232978 (+)
Gene ID: HRGMv2_2909_2_213
Type: TC
Location: 232995 - 233858 (+)
Type: TC
Location: 232995 - 233858 (+)
Gene ID: HRGMv2_2909_2_214
Type: pfam
Location: 233855 - 235066 (+)
Type: pfam
Location: 233855 - 235066 (+)
Gene ID: HRGMv2_2909_2_215
Type: pfam
Location: 235063 - 236043 (+)
Type: pfam
Location: 235063 - 236043 (+)
Gene ID: HRGMv2_2909_2_216
Type: CAZyme
Location: 236106 - 236795 (+)
Type: CAZyme
Location: 236106 - 236795 (+)
Gene ID: HRGMv2_2909_2_217
Type: CAZyme
Location: 236812 - 237969 (+)
Type: CAZyme
Location: 236812 - 237969 (+)
Gene ID: HRGMv2_2909_2_218
Type: CAZyme
Location: 237986 - 239518 (+)
Type: CAZyme
Location: 237986 - 239518 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.