Cluster: HRGMv2_2906_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2906
- CGC Family ID: CGCFAM_00004
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2906_5 | HRGMv2_2906_5_73 | 77291 | 79171 | - | GH13_39 |
| CAZyme | HRGMv2_2906_5 | HRGMv2_2906_5_74 | 79236 | 81671 | - | GT35 |
| CAZyme | HRGMv2_2906_5 | HRGMv2_2906_5_75 | 81691 | 83136 | - | GT5 |
| pfam | HRGMv2_2906_5 | HRGMv2_2906_5_76 | 83133 | 84266 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2906_5 | HRGMv2_2906_5_77 | 84279 | 85466 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2906_5 | HRGMv2_2906_5_78 | 85530 | 87419 | - | CBM48 | GH13_9 |
| NULL(UNKNOWN) | HRGMv2_2906_5 | HRGMv2_2906_5_79 | 87454 | 87912 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2906_5 | HRGMv2_2906_5_80 | 88193 | 90265 | + | GH43_26 |
| CAZyme | HRGMv2_2906_5 | HRGMv2_2906_5_81 | 90422 | 91930 | + | GH93 |
| TC | HRGMv2_2906_5 | HRGMv2_2906_5_82 | 91982 | 93181 | - | 2.A.4.7.7 |
| TC | HRGMv2_2906_5 | HRGMv2_2906_5_83 | 93296 | 94987 | - | 4.C.1.1.14 |
Gene ID: HRGMv2_2906_5_73
Type: CAZyme
Location: 77291 - 79171 (-)
Type: CAZyme
Location: 77291 - 79171 (-)
Gene ID: HRGMv2_2906_5_74
Type: CAZyme
Location: 79236 - 81671 (-)
Type: CAZyme
Location: 79236 - 81671 (-)
Gene ID: HRGMv2_2906_5_75
Type: CAZyme
Location: 81691 - 83136 (-)
Type: CAZyme
Location: 81691 - 83136 (-)
Gene ID: HRGMv2_2906_5_76
Type: pfam
Location: 83133 - 84266 (-)
Type: pfam
Location: 83133 - 84266 (-)
Gene ID: HRGMv2_2906_5_77
Type: pfam
Location: 84279 - 85466 (-)
Type: pfam
Location: 84279 - 85466 (-)
Gene ID: HRGMv2_2906_5_78
Type: CAZyme
Location: 85530 - 87419 (-)
Type: CAZyme
Location: 85530 - 87419 (-)
Gene ID: HRGMv2_2906_5_79
Type:
Location: 87454 - 87912 (-)
Type:
Location: 87454 - 87912 (-)
Gene ID: HRGMv2_2906_5_80
Type: CAZyme
Location: 88193 - 90265 (+)
Type: CAZyme
Location: 88193 - 90265 (+)
Gene ID: HRGMv2_2906_5_81
Type: CAZyme
Location: 90422 - 91930 (+)
Type: CAZyme
Location: 90422 - 91930 (+)
Gene ID: HRGMv2_2906_5_82
Type: TC
Location: 91982 - 93181 (-)
Type: TC
Location: 91982 - 93181 (-)
Gene ID: HRGMv2_2906_5_83
Type: TC
Location: 93296 - 94987 (-)
Type: TC
Location: 93296 - 94987 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS902
Species
UMGS902 sp934467415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2906_5_79 | vegetarian > omnivore | 6.14236 | 0.03377 |
| HRGMv2_2906_5_79 | vegetarian > vegan | 16.12010 | 0.00181 |