Cluster: HRGMv2_2906_CGC2

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2906_4	HRGMv2_2906_4_58	59269	60141	+	3.A.1.3.20
TC	HRGMv2_2906_4	HRGMv2_2906_4_59	60203	60979	+	3.A.1.3.20
TC	HRGMv2_2906_4	HRGMv2_2906_4_60	60972	61724	+	3.A.1.3.20
TC	HRGMv2_2906_4	HRGMv2_2906_4_61	61862	63637	+	2.A.35.2.1
pfam	HRGMv2_2906_4	HRGMv2_2906_4_62	63687	64013	-	CdAMP_rec
pfam	HRGMv2_2906_4	HRGMv2_2906_4_63	64033	64521	-	DUF1854
TC	HRGMv2_2906_4	HRGMv2_2906_4_64	64535	66805	-	3.A.1.135.5
CAZyme	HRGMv2_2906_4	HRGMv2_2906_4_65	67072	68274	-	GT28

Gene ID: HRGMv2_2906_4_58
Type: TC
Location: 59269 - 60141 (+)

Gene ID: HRGMv2_2906_4_59
Type: TC
Location: 60203 - 60979 (+)

Gene ID: HRGMv2_2906_4_60
Type: TC
Location: 60972 - 61724 (+)

Gene ID: HRGMv2_2906_4_61
Type: TC
Location: 61862 - 63637 (+)

Gene ID: HRGMv2_2906_4_62
Type: pfam
Location: 63687 - 64013 (-)

Gene ID: HRGMv2_2906_4_63
Type: pfam
Location: 64033 - 64521 (-)

Gene ID: HRGMv2_2906_4_64
Type: TC
Location: 64535 - 66805 (-)

Gene ID: HRGMv2_2906_4_65
Type: CAZyme
Location: 67072 - 68274 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2906_4_58	vegetarian > vegan	2.15993	0.00181
HRGMv2_2906_4_59	vegetarian > vegan	1.24728	0.00181
HRGMv2_2906_4_64	vegetarian > omnivore	2.39494	0.03377
HRGMv2_2906_4_64	vegetarian > vegan	2.61724	0.00181

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2906_4_59	vegan > omnivore	1.51697	0.01882