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Cluster: HRGMv2_2906_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2906_38 HRGMv2_2906_38_1 3 893 - 3.A.16.1.2
TC HRGMv2_2906_38 HRGMv2_2906_38_2 1194 2555 + 2.A.26.1.3
TF HRGMv2_2906_38 HRGMv2_2906_38_3 2715 3188 + MarR
TC HRGMv2_2906_38 HRGMv2_2906_38_4 3185 4954 + 3.A.1.135.6
TC HRGMv2_2906_38 HRGMv2_2906_38_5 4956 6752 + 3.A.1.135.6
pfam HRGMv2_2906_38 HRGMv2_2906_38_6 7069 7701 - G3P_acyltransf
CAZyme HRGMv2_2906_38 HRGMv2_2906_38_7 7698 8804 - GT28
STP HRGMv2_2906_38 HRGMv2_2906_38_8 8801 9331 - HD
CAZyme HRGMv2_2906_38 HRGMv2_2906_38_9 9604 12993 + GH43_26
STP HRGMv2_2906_38 HRGMv2_2906_38_10 13160 13966 + SBP_bac_1
TC HRGMv2_2906_38 HRGMv2_2906_38_11 14226 15095 + 3.A.1.7.1
TC HRGMv2_2906_38 HRGMv2_2906_38_12 15097 15960 + 3.A.1.7.2
TC HRGMv2_2906_38 HRGMv2_2906_38_13 15957 16295 + 3.A.1.7.5
Gene ID: HRGMv2_2906_38_1
Type: TC
Location: 3 - 893 (-)
Gene ID: HRGMv2_2906_38_2
Type: TC
Location: 1194 - 2555 (+)
Gene ID: HRGMv2_2906_38_3
Type: TF
Location: 2715 - 3188 (+)
Gene ID: HRGMv2_2906_38_4
Type: TC
Location: 3185 - 4954 (+)
Gene ID: HRGMv2_2906_38_5
Type: TC
Location: 4956 - 6752 (+)
Gene ID: HRGMv2_2906_38_6
Type: pfam
Location: 7069 - 7701 (-)
Gene ID: HRGMv2_2906_38_7
Type: CAZyme
Location: 7698 - 8804 (-)
Gene ID: HRGMv2_2906_38_8
Type: STP
Location: 8801 - 9331 (-)
Gene ID: HRGMv2_2906_38_9
Type: CAZyme
Location: 9604 - 12993 (+)
Gene ID: HRGMv2_2906_38_10
Type: STP
Location: 13160 - 13966 (+)
Gene ID: HRGMv2_2906_38_11
Type: TC
Location: 14226 - 15095 (+)
Gene ID: HRGMv2_2906_38_12
Type: TC
Location: 15097 - 15960 (+)
Gene ID: HRGMv2_2906_38_13
Type: TC
Location: 15957 - 16295 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
CAG-272
→
Genus
UMGS902
→
Species
UMGS902 sp934467415

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2906_38_4 vegetarian > vegan 1.36416 0.00181

🧭 Explore Read Mapping of CGC

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