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Cluster: HRGMv2_2906_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2906_4 HRGMv2_2906_4_22 19261 19896 + 2.A.115.2.14
STP HRGMv2_2906_4 HRGMv2_2906_4_23 19893 20471 + NUDIX
pfam HRGMv2_2906_4 HRGMv2_2906_4_24 20509 20943 + YpsA
CAZyme HRGMv2_2906_4 HRGMv2_2906_4_25 21172 24003 + GH31
CAZyme HRGMv2_2906_4 HRGMv2_2906_4_26 24175 26970 + GH31
TF HRGMv2_2906_4 HRGMv2_2906_4_27 27574 28341 - 0035607 | 0036286
CAZyme HRGMv2_2906_4 HRGMv2_2906_4_28 28593 30965 + GH31_15
Gene ID: HRGMv2_2906_4_22
Type: TC
Location: 19261 - 19896 (+)
Gene ID: HRGMv2_2906_4_23
Type: STP
Location: 19893 - 20471 (+)
Gene ID: HRGMv2_2906_4_24
Type: pfam
Location: 20509 - 20943 (+)
Gene ID: HRGMv2_2906_4_25
Type: CAZyme
Location: 21172 - 24003 (+)
Gene ID: HRGMv2_2906_4_26
Type: CAZyme
Location: 24175 - 26970 (+)
Gene ID: HRGMv2_2906_4_27
Type: TF
Location: 27574 - 28341 (-)
Gene ID: HRGMv2_2906_4_28
Type: CAZyme
Location: 28593 - 30965 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
CAG-272
→
Genus
UMGS902
→
Species
UMGS902 sp934467415

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2906_4_24 vegetarian > omnivore 3.26572 0.03377
HRGMv2_2906_4_24 vegetarian > vegan 3.50368 0.00181

🧭 Explore Read Mapping of CGC

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