Cluster: HRGMv2_2896_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2896
- CGC Family ID: CGCFAM_06181
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2896_5 | HRGMv2_2896_5_31 | 39248 | 40603 | - | 2.A.26.1.3 |
| TC | HRGMv2_2896_5 | HRGMv2_2896_5_32 | 40609 | 41934 | - | 2.A.22.5.2 |
| NULL(UNKNOWN) | HRGMv2_2896_5 | HRGMv2_2896_5_33 | 42390 | 43268 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2896_5 | HRGMv2_2896_5_34 | 43325 | 45781 | - | GH3 |
Gene ID: HRGMv2_2896_5_31
Type: TC
Location: 39248 - 40603 (-)
Type: TC
Location: 39248 - 40603 (-)
Gene ID: HRGMv2_2896_5_32
Type: TC
Location: 40609 - 41934 (-)
Type: TC
Location: 40609 - 41934 (-)
Gene ID: HRGMv2_2896_5_33
Type:
Location: 42390 - 43268 (+)
Type:
Location: 42390 - 43268 (+)
Gene ID: HRGMv2_2896_5_34
Type: CAZyme
Location: 43325 - 45781 (-)
Type: CAZyme
Location: 43325 - 45781 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_5_31 | vegetarian > vegan | 1.15452 | 0.00701 |
| HRGMv2_2896_5_33 | vegetarian > omnivore | 1.15455 | 0.00454 |
| HRGMv2_2896_5_33 | vegetarian > vegan | 1.36123 | 0.00701 |
| HRGMv2_2896_5_34 | vegetarian > omnivore | 1.56020 | 0.00454 |
| HRGMv2_2896_5_34 | vegetarian > vegan | 1.42400 | 0.00701 |