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Cluster: HRGMv2_2893_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2893_5 HRGMv2_2893_5_59 62286 63812 - 3.A.1.120.2
CAZyme HRGMv2_2893_5 HRGMv2_2893_5_60 64024 65790 - GH31_7
TC HRGMv2_2893_5 HRGMv2_2893_5_61 65800 66627 - 3.A.1.1.39
TC HRGMv2_2893_5 HRGMv2_2893_5_62 66617 67540 - 3.A.1.1.11
TC HRGMv2_2893_5 HRGMv2_2893_5_63 67626 68933 - 3.A.1.1.44
TF HRGMv2_2893_5 HRGMv2_2893_5_64 69109 70128 - LacI
pfam HRGMv2_2893_5 HRGMv2_2893_5_65 70318 72096 + Glyco_hydro_125
CAZyme HRGMv2_2893_5 HRGMv2_2893_5_66 72086 74224 + GH65
Gene ID: HRGMv2_2893_5_59
Type: TC
Location: 62286 - 63812 (-)
Gene ID: HRGMv2_2893_5_60
Type: CAZyme
Location: 64024 - 65790 (-)
Gene ID: HRGMv2_2893_5_61
Type: TC
Location: 65800 - 66627 (-)
Gene ID: HRGMv2_2893_5_62
Type: TC
Location: 66617 - 67540 (-)
Gene ID: HRGMv2_2893_5_63
Type: TC
Location: 67626 - 68933 (-)
Gene ID: HRGMv2_2893_5_64
Type: TF
Location: 69109 - 70128 (-)
Gene ID: HRGMv2_2893_5_65
Type: pfam
Location: 70318 - 72096 (+)
Gene ID: HRGMv2_2893_5_66
Type: CAZyme
Location: 72086 - 74224 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2893_5_59 vegetarian > vegan 1.56365 0.00566
HRGMv2_2893_5_65 vegetarian > vegan 1.60543 0.00566
HRGMv2_2893_5_66 vegetarian > vegan 2.75915 0.00566

🧭 Explore Read Mapping of CGC

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