Cluster: HRGMv2_2893_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2893
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2893_4 | HRGMv2_2893_4_49 | 57123 | 57827 | + | 9.B.120.1.3 |
| pfam | HRGMv2_2893_4 | HRGMv2_2893_4_50 | 57824 | 58711 | + | EamA | EamA |
| CAZyme | HRGMv2_2893_4 | HRGMv2_2893_4_51 | 58772 | 59728 | + | GH25 |
| sulfatase | HRGMv2_2893_4 | HRGMv2_2893_4_52 | 59988 | 61175 | + | S1_2 |
| pfam | HRGMv2_2893_4 | HRGMv2_2893_4_53 | 61293 | 61703 | - | HSP20 |
| TC | HRGMv2_2893_4 | HRGMv2_2893_4_54 | 61893 | 62639 | - | 3.A.1.3.25 |
| TC | HRGMv2_2893_4 | HRGMv2_2893_4_55 | 62629 | 63390 | - | 3.A.1.3.20 |
| TC | HRGMv2_2893_4 | HRGMv2_2893_4_56 | 63495 | 64340 | - | 3.A.1.3.27 |
| TC | HRGMv2_2893_4 | HRGMv2_2893_4_57 | 64566 | 65375 | - | 3.A.1.15.15 |
| TC | HRGMv2_2893_4 | HRGMv2_2893_4_58 | 65372 | 66079 | - | 3.A.1.15.8 |
| TC | HRGMv2_2893_4 | HRGMv2_2893_4_59 | 66079 | 67020 | - | 3.A.1.15.11 |
Gene ID: HRGMv2_2893_4_49
Type: TC
Location: 57123 - 57827 (+)
Type: TC
Location: 57123 - 57827 (+)
Gene ID: HRGMv2_2893_4_50
Type: pfam
Location: 57824 - 58711 (+)
Type: pfam
Location: 57824 - 58711 (+)
Gene ID: HRGMv2_2893_4_51
Type: CAZyme
Location: 58772 - 59728 (+)
Type: CAZyme
Location: 58772 - 59728 (+)
Gene ID: HRGMv2_2893_4_52
Type: sulfatase
Location: 59988 - 61175 (+)
Type: sulfatase
Location: 59988 - 61175 (+)
Gene ID: HRGMv2_2893_4_53
Type: pfam
Location: 61293 - 61703 (-)
Type: pfam
Location: 61293 - 61703 (-)
Gene ID: HRGMv2_2893_4_54
Type: TC
Location: 61893 - 62639 (-)
Type: TC
Location: 61893 - 62639 (-)
Gene ID: HRGMv2_2893_4_55
Type: TC
Location: 62629 - 63390 (-)
Type: TC
Location: 62629 - 63390 (-)
Gene ID: HRGMv2_2893_4_56
Type: TC
Location: 63495 - 64340 (-)
Type: TC
Location: 63495 - 64340 (-)
Gene ID: HRGMv2_2893_4_57
Type: TC
Location: 64566 - 65375 (-)
Type: TC
Location: 64566 - 65375 (-)
Gene ID: HRGMv2_2893_4_58
Type: TC
Location: 65372 - 66079 (-)
Type: TC
Location: 65372 - 66079 (-)
Gene ID: HRGMv2_2893_4_59
Type: TC
Location: 66079 - 67020 (-)
Type: TC
Location: 66079 - 67020 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp900545405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2893_4_49 | vegetarian > vegan | 1.80809 | 0.00566 |
| HRGMv2_2893_4_50 | vegetarian > omnivore | 1.21831 | 0.00290 |
| HRGMv2_2893_4_51 | vegetarian > vegan | 1.85456 | 0.00566 |
| HRGMv2_2893_4_53 | vegetarian > vegan | 1.25710 | 0.00566 |
| HRGMv2_2893_4_57 | vegetarian > vegan | 1.32199 | 0.00566 |
| HRGMv2_2893_4_58 | vegetarian > omnivore | 1.22533 | 0.00290 |
| HRGMv2_2893_4_59 | vegetarian > omnivore | 1.48786 | 0.00290 |