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Cluster: HRGMv2_2893_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2893_2 HRGMv2_2893_2_11 8176 9969 + 8.A.59.2.1
TF HRGMv2_2893_2 HRGMv2_2893_2_12 9944 11035 + HTH_AraC | HTH_AraC
STP HRGMv2_2893_2 HRGMv2_2893_2_13 11119 12411 + SBP_bac_1
TC HRGMv2_2893_2 HRGMv2_2893_2_14 12476 13354 + 3.A.1.1.45
TC HRGMv2_2893_2 HRGMv2_2893_2_15 13351 14181 + 3.A.1.1.45
CAZyme HRGMv2_2893_2 HRGMv2_2893_2_16 14186 15688 + GH5_46
CAZyme HRGMv2_2893_2 HRGMv2_2893_2_17 15685 17028 + GH30_1
CAZyme HRGMv2_2893_2 HRGMv2_2893_2_18 17030 20044 + GH161
CAZyme HRGMv2_2893_2 HRGMv2_2893_2_19 20073 22244 + CBM32 | GH5_54
Gene ID: HRGMv2_2893_2_11
Type: TC
Location: 8176 - 9969 (+)
Gene ID: HRGMv2_2893_2_12
Type: TF
Location: 9944 - 11035 (+)
Gene ID: HRGMv2_2893_2_13
Type: STP
Location: 11119 - 12411 (+)
Gene ID: HRGMv2_2893_2_14
Type: TC
Location: 12476 - 13354 (+)
Gene ID: HRGMv2_2893_2_15
Type: TC
Location: 13351 - 14181 (+)
Gene ID: HRGMv2_2893_2_16
Type: CAZyme
Location: 14186 - 15688 (+)
Gene ID: HRGMv2_2893_2_17
Type: CAZyme
Location: 15685 - 17028 (+)
Gene ID: HRGMv2_2893_2_18
Type: CAZyme
Location: 17030 - 20044 (+)
Gene ID: HRGMv2_2893_2_19
Type: CAZyme
Location: 20073 - 22244 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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