Cluster: HRGMv2_2893_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2893
- CGC Family ID: CGCFAM_10207
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2893_1 | HRGMv2_2893_1_70 | 67655 | 68497 | - | 3.A.1.1.27 |
| TC | HRGMv2_2893_1 | HRGMv2_2893_1_71 | 68514 | 69395 | - | 3.A.1.1.20 |
| STP | HRGMv2_2893_1 | HRGMv2_2893_1_72 | 69474 | 70811 | - | SBP_bac_1 |
| pfam | HRGMv2_2893_1 | HRGMv2_2893_1_73 | 71200 | 71883 | + | DeoC |
| CAZyme | HRGMv2_2893_1 | HRGMv2_2893_1_74 | 71990 | 74965 | + | GH2 |
| TF | HRGMv2_2893_1 | HRGMv2_2893_1_75 | 74992 | 75771 | + | GntR |
| TC | HRGMv2_2893_1 | HRGMv2_2893_1_76 | 75799 | 77541 | + | 9.B.33.1.1 |
Gene ID: HRGMv2_2893_1_70
Type: TC
Location: 67655 - 68497 (-)
Type: TC
Location: 67655 - 68497 (-)
Gene ID: HRGMv2_2893_1_71
Type: TC
Location: 68514 - 69395 (-)
Type: TC
Location: 68514 - 69395 (-)
Gene ID: HRGMv2_2893_1_72
Type: STP
Location: 69474 - 70811 (-)
Type: STP
Location: 69474 - 70811 (-)
Gene ID: HRGMv2_2893_1_73
Type: pfam
Location: 71200 - 71883 (+)
Type: pfam
Location: 71200 - 71883 (+)
Gene ID: HRGMv2_2893_1_74
Type: CAZyme
Location: 71990 - 74965 (+)
Type: CAZyme
Location: 71990 - 74965 (+)
Gene ID: HRGMv2_2893_1_75
Type: TF
Location: 74992 - 75771 (+)
Type: TF
Location: 74992 - 75771 (+)
Gene ID: HRGMv2_2893_1_76
Type: TC
Location: 75799 - 77541 (+)
Type: TC
Location: 75799 - 77541 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp900545405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.