dbCAN Logo

Cluster: HRGMv2_2893_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2893_73 HRGMv2_2893_73_1 101 1642 - GH77
TC HRGMv2_2893_73 HRGMv2_2893_73_2 1649 2521 - 3.A.1.1.45
TC HRGMv2_2893_73 HRGMv2_2893_73_3 2518 3369 - 3.A.1.1.45
TC HRGMv2_2893_73 HRGMv2_2893_73_4 3520 4902 - 3.A.1.1.45
TF HRGMv2_2893_73 HRGMv2_2893_73_5 4962 5972 - LacI
STP HRGMv2_2893_73 HRGMv2_2893_73_6 6269 6505 + FeoA
TC HRGMv2_2893_73 HRGMv2_2893_73_7 6492 6713 + 9.A.8.1.6
TC HRGMv2_2893_73 HRGMv2_2893_73_8 6802 8970 + 9.A.8.1.6
Gene ID: HRGMv2_2893_73_1
Type: CAZyme
Location: 101 - 1642 (-)
Gene ID: HRGMv2_2893_73_2
Type: TC
Location: 1649 - 2521 (-)
Gene ID: HRGMv2_2893_73_3
Type: TC
Location: 2518 - 3369 (-)
Gene ID: HRGMv2_2893_73_4
Type: TC
Location: 3520 - 4902 (-)
Gene ID: HRGMv2_2893_73_5
Type: TF
Location: 4962 - 5972 (-)
Gene ID: HRGMv2_2893_73_6
Type: STP
Location: 6269 - 6505 (+)
Gene ID: HRGMv2_2893_73_7
Type: TC
Location: 6492 - 6713 (+)
Gene ID: HRGMv2_2893_73_8
Type: TC
Location: 6802 - 8970 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2893_73_1 vegetarian > vegan 1.19334 0.00566
HRGMv2_2893_73_5 vegetarian > vegan 1.91728 0.00566

🧭 Explore Read Mapping of CGC

← Back to Cluster List