Cluster: HRGMv2_2893_CGC22
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2893
- CGC Family ID: CGCFAM_00173
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2893_43 | HRGMv2_2893_43_9 | 4823 | 5659 | - | GT8 |
| pfam | HRGMv2_2893_43 | HRGMv2_2893_43_10 | 5670 | 6212 | - | DUF308 | DUF308 | DUF308 |
| NULL(UNKNOWN) | HRGMv2_2893_43 | HRGMv2_2893_43_11 | 6482 | 6928 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2893_43 | HRGMv2_2893_43_12 | 6930 | 8741 | + | 3.A.25.2.1 |
| TC | HRGMv2_2893_43 | HRGMv2_2893_43_13 | 8787 | 9602 | - | 3.D.6.1.2 |
| TC | HRGMv2_2893_43 | HRGMv2_2893_43_14 | 9615 | 10196 | - | 3.D.6.1.2 |
| TC | HRGMv2_2893_43 | HRGMv2_2893_43_15 | 10196 | 10906 | - | 3.D.6.1.2 |
| TC | HRGMv2_2893_43 | HRGMv2_2893_43_16 | 10921 | 11466 | - | 3.D.6.1.3 |
| TC | HRGMv2_2893_43 | HRGMv2_2893_43_17 | 11459 | 12499 | - | 3.D.6.1.2 |
| TC | HRGMv2_2893_43 | HRGMv2_2893_43_18 | 12499 | 13875 | - | 3.D.6.1.2 |
| TC | HRGMv2_2893_43 | HRGMv2_2893_43_19 | 14169 | 15458 | + | 2.A.1.84.3 |
| CAZyme | HRGMv2_2893_43 | HRGMv2_2893_43_20 | 15445 | 17166 | + | GH2 |
Gene ID: HRGMv2_2893_43_9
Type: CAZyme
Location: 4823 - 5659 (-)
Type: CAZyme
Location: 4823 - 5659 (-)
Gene ID: HRGMv2_2893_43_10
Type: pfam
Location: 5670 - 6212 (-)
Type: pfam
Location: 5670 - 6212 (-)
Gene ID: HRGMv2_2893_43_11
Type:
Location: 6482 - 6928 (+)
Type:
Location: 6482 - 6928 (+)
Gene ID: HRGMv2_2893_43_12
Type: TC
Location: 6930 - 8741 (+)
Type: TC
Location: 6930 - 8741 (+)
Gene ID: HRGMv2_2893_43_13
Type: TC
Location: 8787 - 9602 (-)
Type: TC
Location: 8787 - 9602 (-)
Gene ID: HRGMv2_2893_43_14
Type: TC
Location: 9615 - 10196 (-)
Type: TC
Location: 9615 - 10196 (-)
Gene ID: HRGMv2_2893_43_15
Type: TC
Location: 10196 - 10906 (-)
Type: TC
Location: 10196 - 10906 (-)
Gene ID: HRGMv2_2893_43_16
Type: TC
Location: 10921 - 11466 (-)
Type: TC
Location: 10921 - 11466 (-)
Gene ID: HRGMv2_2893_43_17
Type: TC
Location: 11459 - 12499 (-)
Type: TC
Location: 11459 - 12499 (-)
Gene ID: HRGMv2_2893_43_18
Type: TC
Location: 12499 - 13875 (-)
Type: TC
Location: 12499 - 13875 (-)
Gene ID: HRGMv2_2893_43_19
Type: TC
Location: 14169 - 15458 (+)
Type: TC
Location: 14169 - 15458 (+)
Gene ID: HRGMv2_2893_43_20
Type: CAZyme
Location: 15445 - 17166 (+)
Type: CAZyme
Location: 15445 - 17166 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp900545405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2893_43_16 | vegetarian > omnivore | 1.15690 | 0.00290 |
| HRGMv2_2893_43_18 | vegetarian > omnivore | 1.42058 | 0.00290 |
| HRGMv2_2893_43_19 | vegetarian > vegan | 1.61765 | 0.00566 |