Cluster: HRGMv2_2893_CGC21
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2893
- CGC Family ID: CGCFAM_02525
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2893_34 | HRGMv2_2893_34_7 | 4760 | 6313 | + | 3.A.1.2.12 |
| TC | HRGMv2_2893_34 | HRGMv2_2893_34_8 | 6297 | 7391 | + | 3.A.1.2.12 |
| TC | HRGMv2_2893_34 | HRGMv2_2893_34_9 | 7384 | 8349 | + | 3.A.1.2.18 |
| NULL(UNKNOWN) | HRGMv2_2893_34 | HRGMv2_2893_34_10 | 8353 | 8856 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2893_34 | HRGMv2_2893_34_11 | 8913 | 10562 | - | GH13_31 |
| pfam | HRGMv2_2893_34 | HRGMv2_2893_34_12 | 10567 | 11172 | - | DUF624 |
| TF | HRGMv2_2893_34 | HRGMv2_2893_34_13 | 11174 | 12070 | - | HTH_AraC |
| CAZyme | HRGMv2_2893_34 | HRGMv2_2893_34_14 | 12073 | 13692 | - | GH66 |
| TC | HRGMv2_2893_34 | HRGMv2_2893_34_15 | 13695 | 14567 | - | 3.A.1.1.18 |
| TC | HRGMv2_2893_34 | HRGMv2_2893_34_16 | 14569 | 15507 | - | 3.A.1.1.20 |
| TC | HRGMv2_2893_34 | HRGMv2_2893_34_17 | 15574 | 16860 | - | 3.A.1.1.16 |
Gene ID: HRGMv2_2893_34_7
Type: TC
Location: 4760 - 6313 (+)
Type: TC
Location: 4760 - 6313 (+)
Gene ID: HRGMv2_2893_34_8
Type: TC
Location: 6297 - 7391 (+)
Type: TC
Location: 6297 - 7391 (+)
Gene ID: HRGMv2_2893_34_9
Type: TC
Location: 7384 - 8349 (+)
Type: TC
Location: 7384 - 8349 (+)
Gene ID: HRGMv2_2893_34_10
Type:
Location: 8353 - 8856 (+)
Type:
Location: 8353 - 8856 (+)
Gene ID: HRGMv2_2893_34_11
Type: CAZyme
Location: 8913 - 10562 (-)
Type: CAZyme
Location: 8913 - 10562 (-)
Gene ID: HRGMv2_2893_34_12
Type: pfam
Location: 10567 - 11172 (-)
Type: pfam
Location: 10567 - 11172 (-)
Gene ID: HRGMv2_2893_34_13
Type: TF
Location: 11174 - 12070 (-)
Type: TF
Location: 11174 - 12070 (-)
Gene ID: HRGMv2_2893_34_14
Type: CAZyme
Location: 12073 - 13692 (-)
Type: CAZyme
Location: 12073 - 13692 (-)
Gene ID: HRGMv2_2893_34_15
Type: TC
Location: 13695 - 14567 (-)
Type: TC
Location: 13695 - 14567 (-)
Gene ID: HRGMv2_2893_34_16
Type: TC
Location: 14569 - 15507 (-)
Type: TC
Location: 14569 - 15507 (-)
Gene ID: HRGMv2_2893_34_17
Type: TC
Location: 15574 - 16860 (-)
Type: TC
Location: 15574 - 16860 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp900545405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2893_34_7 | vegetarian > vegan | 1.32621 | 0.00566 |
| HRGMv2_2893_34_8 | vegetarian > omnivore | 1.33472 | 0.00290 |
| HRGMv2_2893_34_8 | vegetarian > vegan | 1.66174 | 0.00566 |
| HRGMv2_2893_34_9 | vegetarian > vegan | 1.38164 | 0.00566 |
| HRGMv2_2893_34_10 | vegetarian > vegan | 2.32239 | 0.00566 |
| HRGMv2_2893_34_13 | vegetarian > vegan | 3.16425 | 0.00566 |
| HRGMv2_2893_34_14 | vegetarian > vegan | 2.84326 | 0.00566 |
| HRGMv2_2893_34_15 | vegetarian > vegan | 1.40474 | 0.00566 |