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Cluster: HRGMv2_2893_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2893_32 HRGMv2_2893_32_9 9840 11381 + 3.A.1.2.12
TC HRGMv2_2893_32 HRGMv2_2893_32_10 11374 12486 + 3.A.1.2.12
TC HRGMv2_2893_32 HRGMv2_2893_32_11 12479 13471 + 3.A.1.2.17
STP HRGMv2_2893_32 HRGMv2_2893_32_12 13627 15915 + Pyr_redox_2
CAZyme HRGMv2_2893_32 HRGMv2_2893_32_13 15977 17644 - GH13_31
pfam HRGMv2_2893_32 HRGMv2_2893_32_14 17881 18519 + PCMT | Ubie_methyltran | CMAS | MTS | MetW | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2893_32 HRGMv2_2893_32_15 18516 19580 + 3.A.1.14.19
TC HRGMv2_2893_32 HRGMv2_2893_32_16 19573 20343 + 3.A.1.14.7
Gene ID: HRGMv2_2893_32_9
Type: TC
Location: 9840 - 11381 (+)
Gene ID: HRGMv2_2893_32_10
Type: TC
Location: 11374 - 12486 (+)
Gene ID: HRGMv2_2893_32_11
Type: TC
Location: 12479 - 13471 (+)
Gene ID: HRGMv2_2893_32_12
Type: STP
Location: 13627 - 15915 (+)
Gene ID: HRGMv2_2893_32_13
Type: CAZyme
Location: 15977 - 17644 (-)
Gene ID: HRGMv2_2893_32_14
Type: pfam
Location: 17881 - 18519 (+)
Gene ID: HRGMv2_2893_32_15
Type: TC
Location: 18516 - 19580 (+)
Gene ID: HRGMv2_2893_32_16
Type: TC
Location: 19573 - 20343 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2893_32_13 vegetarian > vegan 1.50678 0.00566
HRGMv2_2893_32_14 vegetarian > vegan 2.08560 0.00566

🧭 Explore Read Mapping of CGC

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