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Cluster: HRGMv2_2893_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2893_30 HRGMv2_2893_30_7 6596 7900 - GH13_20
TC HRGMv2_2893_30 HRGMv2_2893_30_8 7976 8416 - 9.A.11.1.1
pfam HRGMv2_2893_30 HRGMv2_2893_30_9 8530 9324 + Inositol_P
NULL(UNKNOWN) HRGMv2_2893_30 HRGMv2_2893_30_10 9540 10946 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2893_30 HRGMv2_2893_30_11 11040 12866 + 3.A.1.20.2
TC HRGMv2_2893_30 HRGMv2_2893_30_12 12870 14516 + 3.A.1.1.16
pfam HRGMv2_2893_30 HRGMv2_2893_30_13 14582 15376 + Hydrolase | Hydrolase_3
STP HRGMv2_2893_30 HRGMv2_2893_30_14 15377 16393 + SBP_bac_1
TC HRGMv2_2893_30 HRGMv2_2893_30_15 16390 18060 + 8.A.59.2.1
Gene ID: HRGMv2_2893_30_7
Type: CAZyme
Location: 6596 - 7900 (-)
Gene ID: HRGMv2_2893_30_8
Type: TC
Location: 7976 - 8416 (-)
Gene ID: HRGMv2_2893_30_9
Type: pfam
Location: 8530 - 9324 (+)
Gene ID: HRGMv2_2893_30_10
Type:
Location: 9540 - 10946 (+)
Gene ID: HRGMv2_2893_30_11
Type: TC
Location: 11040 - 12866 (+)
Gene ID: HRGMv2_2893_30_12
Type: TC
Location: 12870 - 14516 (+)
Gene ID: HRGMv2_2893_30_13
Type: pfam
Location: 14582 - 15376 (+)
Gene ID: HRGMv2_2893_30_14
Type: STP
Location: 15377 - 16393 (+)
Gene ID: HRGMv2_2893_30_15
Type: TC
Location: 16390 - 18060 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2893_30_9 vegetarian > vegan 1.87856 0.00566

🧭 Explore Read Mapping of CGC

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