Cluster: HRGMv2_2893_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2893
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2893_15 | HRGMv2_2893_15_16 | 21143 | 22816 | + | CBM34 | GH13_20 |
| pfam | HRGMv2_2893_15 | HRGMv2_2893_15_17 | 22818 | 24302 | + | SBP_bac_1 |
| TC | HRGMv2_2893_15 | HRGMv2_2893_15_18 | 24340 | 25653 | + | 3.A.1.1.27 |
| TC | HRGMv2_2893_15 | HRGMv2_2893_15_19 | 25650 | 26498 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_2893_15 | HRGMv2_2893_15_20 | 26503 | 28026 | + | GH13_36 |
Gene ID: HRGMv2_2893_15_16
Type: CAZyme
Location: 21143 - 22816 (+)
Type: CAZyme
Location: 21143 - 22816 (+)
Gene ID: HRGMv2_2893_15_17
Type: pfam
Location: 22818 - 24302 (+)
Type: pfam
Location: 22818 - 24302 (+)
Gene ID: HRGMv2_2893_15_18
Type: TC
Location: 24340 - 25653 (+)
Type: TC
Location: 24340 - 25653 (+)
Gene ID: HRGMv2_2893_15_19
Type: TC
Location: 25650 - 26498 (+)
Type: TC
Location: 25650 - 26498 (+)
Gene ID: HRGMv2_2893_15_20
Type: CAZyme
Location: 26503 - 28026 (+)
Type: CAZyme
Location: 26503 - 28026 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp900545405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2893_15_16 | vegetarian > vegan | 1.65468 | 0.00566 |
| HRGMv2_2893_15_17 | vegetarian > vegan | 1.64454 | 0.00566 |
| HRGMv2_2893_15_18 | vegetarian > vegan | 1.50475 | 0.00566 |
| HRGMv2_2893_15_19 | vegetarian > vegan | 2.17814 | 0.00566 |
| HRGMv2_2893_15_20 | vegetarian > vegan | 1.57490 | 0.00566 |