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Cluster: HRGMv2_2893_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2893_7 HRGMv2_2893_7_31 31080 34766 - CBM35 | CBM35 | CBM61 | GH31_10
CAZyme HRGMv2_2893_7 HRGMv2_2893_7_32 34964 38167 - CBM35 | GH31_7
CAZyme HRGMv2_2893_7 HRGMv2_2893_7_33 38254 40662 - GH31_15
CAZyme HRGMv2_2893_7 HRGMv2_2893_7_34 40688 43390 - GH31_7
TC HRGMv2_2893_7 HRGMv2_2893_7_35 43393 44352 - 3.A.1.1.26
TC HRGMv2_2893_7 HRGMv2_2893_7_36 44349 45293 - 3.A.1.1.11
pfam HRGMv2_2893_7 HRGMv2_2893_7_37 45308 47602 - DUF5696
NULL(UNKNOWN) HRGMv2_2893_7 HRGMv2_2893_7_38 47589 49652 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2893_7 HRGMv2_2893_7_39 49663 50610 - 3.A.1.1.39
TC HRGMv2_2893_7 HRGMv2_2893_7_40 50610 51545 - 3.A.1.1.34
STP HRGMv2_2893_7 HRGMv2_2893_7_41 51548 54448 - SBP_bac_1
STP HRGMv2_2893_7 HRGMv2_2893_7_42 54556 56067 - SBP_bac_1
CAZyme HRGMv2_2893_7 HRGMv2_2893_7_43 56190 58367 - GH65
pfam HRGMv2_2893_7 HRGMv2_2893_7_44 58364 60175 - Glyco_hydro_125
CAZyme HRGMv2_2893_7 HRGMv2_2893_7_45 60197 62851 - GH31_7
TF HRGMv2_2893_7 HRGMv2_2893_7_46 62848 63930 - LacI
NULL(UNKNOWN) HRGMv2_2893_7 HRGMv2_2893_7_47 64500 65744 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2893_7 HRGMv2_2893_7_48 65749 66621 + 3.A.1.148.3
NULL(UNKNOWN) HRGMv2_2893_7 HRGMv2_2893_7_49 66618 68627 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2893_7 HRGMv2_2893_7_50 68701 69276 - SRAP
TC HRGMv2_2893_7 HRGMv2_2893_7_51 69392 70060 - 3.A.1.122.14
Gene ID: HRGMv2_2893_7_31
Type: CAZyme
Location: 31080 - 34766 (-)
Gene ID: HRGMv2_2893_7_32
Type: CAZyme
Location: 34964 - 38167 (-)
Gene ID: HRGMv2_2893_7_33
Type: CAZyme
Location: 38254 - 40662 (-)
Gene ID: HRGMv2_2893_7_34
Type: CAZyme
Location: 40688 - 43390 (-)
Gene ID: HRGMv2_2893_7_35
Type: TC
Location: 43393 - 44352 (-)
Gene ID: HRGMv2_2893_7_36
Type: TC
Location: 44349 - 45293 (-)
Gene ID: HRGMv2_2893_7_37
Type: pfam
Location: 45308 - 47602 (-)
Gene ID: HRGMv2_2893_7_38
Type:
Location: 47589 - 49652 (-)
Gene ID: HRGMv2_2893_7_39
Type: TC
Location: 49663 - 50610 (-)
Gene ID: HRGMv2_2893_7_40
Type: TC
Location: 50610 - 51545 (-)
Gene ID: HRGMv2_2893_7_41
Type: STP
Location: 51548 - 54448 (-)
Gene ID: HRGMv2_2893_7_42
Type: STP
Location: 54556 - 56067 (-)
Gene ID: HRGMv2_2893_7_43
Type: CAZyme
Location: 56190 - 58367 (-)
Gene ID: HRGMv2_2893_7_44
Type: pfam
Location: 58364 - 60175 (-)
Gene ID: HRGMv2_2893_7_45
Type: CAZyme
Location: 60197 - 62851 (-)
Gene ID: HRGMv2_2893_7_46
Type: TF
Location: 62848 - 63930 (-)
Gene ID: HRGMv2_2893_7_47
Type:
Location: 64500 - 65744 (+)
Gene ID: HRGMv2_2893_7_48
Type: TC
Location: 65749 - 66621 (+)
Gene ID: HRGMv2_2893_7_49
Type:
Location: 66618 - 68627 (+)
Gene ID: HRGMv2_2893_7_50
Type: pfam
Location: 68701 - 69276 (-)
Gene ID: HRGMv2_2893_7_51
Type: TC
Location: 69392 - 70060 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2893_7_50 vegetarian > vegan 2.38624 0.00566

🧭 Explore Read Mapping of CGC

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