Cluster: HRGMv2_2893_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2893
- CGC Family ID: CGCFAM_00045
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2893_6 | HRGMv2_2893_6_12 | 10397 | 11674 | + | 3.A.1.1.2 |
| TC | HRGMv2_2893_6 | HRGMv2_2893_6_13 | 11734 | 12618 | + | 3.A.1.1.2 |
| TC | HRGMv2_2893_6 | HRGMv2_2893_6_14 | 12621 | 13463 | + | 3.A.1.1.44 |
| CAZyme | HRGMv2_2893_6 | HRGMv2_2893_6_15 | 13466 | 15121 | + | CBM34 | GH13_20 |
Gene ID: HRGMv2_2893_6_12
Type: TC
Location: 10397 - 11674 (+)
Type: TC
Location: 10397 - 11674 (+)
Gene ID: HRGMv2_2893_6_13
Type: TC
Location: 11734 - 12618 (+)
Type: TC
Location: 11734 - 12618 (+)
Gene ID: HRGMv2_2893_6_14
Type: TC
Location: 12621 - 13463 (+)
Type: TC
Location: 12621 - 13463 (+)
Gene ID: HRGMv2_2893_6_15
Type: CAZyme
Location: 13466 - 15121 (+)
Type: CAZyme
Location: 13466 - 15121 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp900545405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2893_6_12 | vegetarian > vegan | 2.88795 | 0.00566 |
| HRGMv2_2893_6_14 | vegetarian > vegan | 3.16265 | 0.00566 |
| HRGMv2_2893_6_15 | vegetarian > vegan | 1.67912 | 0.00566 |