Cluster: HRGMv2_2893_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2893
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2893_1 | HRGMv2_2893_1_38 | 31929 | 33485 | + | GH3 |
| STP | HRGMv2_2893_1 | HRGMv2_2893_1_39 | 33609 | 34913 | + | SBP_bac_1 |
| TC | HRGMv2_2893_1 | HRGMv2_2893_1_40 | 35000 | 35896 | + | 3.A.1.1.11 |
| TC | HRGMv2_2893_1 | HRGMv2_2893_1_41 | 35900 | 36724 | + | 3.A.1.1.11 |
Gene ID: HRGMv2_2893_1_38
Type: CAZyme
Location: 31929 - 33485 (+)
Type: CAZyme
Location: 31929 - 33485 (+)
Gene ID: HRGMv2_2893_1_39
Type: STP
Location: 33609 - 34913 (+)
Type: STP
Location: 33609 - 34913 (+)
Gene ID: HRGMv2_2893_1_40
Type: TC
Location: 35000 - 35896 (+)
Type: TC
Location: 35000 - 35896 (+)
Gene ID: HRGMv2_2893_1_41
Type: TC
Location: 35900 - 36724 (+)
Type: TC
Location: 35900 - 36724 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp900545405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2893_1_39 | vegetarian > vegan | 1.49218 | 0.00566 |
| HRGMv2_2893_1_41 | vegetarian > vegan | 2.61676 | 0.00566 |