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Cluster: HRGMv2_2882_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2882_8 HRGMv2_2882_8_33 36755 38146 - 2.A.66.1.32
CAZyme HRGMv2_2882_8 HRGMv2_2882_8_34 38280 39995 - CBM34 | GH13_20
TC HRGMv2_2882_8 HRGMv2_2882_8_35 39998 40840 - 3.A.1.1.2
TC HRGMv2_2882_8 HRGMv2_2882_8_36 40843 41724 - 3.A.1.1.2
TC HRGMv2_2882_8 HRGMv2_2882_8_37 41782 43059 - 3.A.1.1.2
TF HRGMv2_2882_8 HRGMv2_2882_8_38 43243 44241 + LacI
TF HRGMv2_2882_8 HRGMv2_2882_8_39 44276 45289 - LacI
CAZyme HRGMv2_2882_8 HRGMv2_2882_8_40 45294 47012 - CBM34 | GH13_20
TC HRGMv2_2882_8 HRGMv2_2882_8_41 47014 47859 - 3.A.1.1.6
TC HRGMv2_2882_8 HRGMv2_2882_8_42 47856 48761 - 3.A.1.1.2
TC HRGMv2_2882_8 HRGMv2_2882_8_43 48761 49960 - 3.A.1.1.16
Gene ID: HRGMv2_2882_8_33
Type: TC
Location: 36755 - 38146 (-)
Gene ID: HRGMv2_2882_8_34
Type: CAZyme
Location: 38280 - 39995 (-)
Gene ID: HRGMv2_2882_8_35
Type: TC
Location: 39998 - 40840 (-)
Gene ID: HRGMv2_2882_8_36
Type: TC
Location: 40843 - 41724 (-)
Gene ID: HRGMv2_2882_8_37
Type: TC
Location: 41782 - 43059 (-)
Gene ID: HRGMv2_2882_8_38
Type: TF
Location: 43243 - 44241 (+)
Gene ID: HRGMv2_2882_8_39
Type: TF
Location: 44276 - 45289 (-)
Gene ID: HRGMv2_2882_8_40
Type: CAZyme
Location: 45294 - 47012 (-)
Gene ID: HRGMv2_2882_8_41
Type: TC
Location: 47014 - 47859 (-)
Gene ID: HRGMv2_2882_8_42
Type: TC
Location: 47856 - 48761 (-)
Gene ID: HRGMv2_2882_8_43
Type: TC
Location: 48761 - 49960 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2882_8_40 vegetarian > vegan 1.18840 0.00364
HRGMv2_2882_8_43 vegetarian > vegan 1.34973 0.00364

🧭 Explore Read Mapping of CGC

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