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Cluster: HRGMv2_2882_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2882_7 HRGMv2_2882_7_13 12979 13902 - GH25
pfam HRGMv2_2882_7 HRGMv2_2882_7_14 13963 14859 - EamA | EamA
TC HRGMv2_2882_7 HRGMv2_2882_7_15 14856 15557 - 9.B.120.1.3
pfam HRGMv2_2882_7 HRGMv2_2882_7_16 15843 16730 + APH
pfam HRGMv2_2882_7 HRGMv2_2882_7_17 16771 18051 - GHMP_kinases_N | GalKase_gal_bdg
TC HRGMv2_2882_7 HRGMv2_2882_7_18 18164 19816 - 3.A.1.2.3
TC HRGMv2_2882_7 HRGMv2_2882_7_19 19834 21342 - 3.A.1.2.3
pfam HRGMv2_2882_7 HRGMv2_2882_7_20 21469 22788 - Peripla_BP_4 | Peripla_BP_7
STP HRGMv2_2882_7 HRGMv2_2882_7_21 22980 23945 - Peripla_BP_1
TC HRGMv2_2882_7 HRGMv2_2882_7_22 23932 25650 - 8.A.59.2.1
Gene ID: HRGMv2_2882_7_13
Type: CAZyme
Location: 12979 - 13902 (-)
Gene ID: HRGMv2_2882_7_14
Type: pfam
Location: 13963 - 14859 (-)
Gene ID: HRGMv2_2882_7_15
Type: TC
Location: 14856 - 15557 (-)
Gene ID: HRGMv2_2882_7_16
Type: pfam
Location: 15843 - 16730 (+)
Gene ID: HRGMv2_2882_7_17
Type: pfam
Location: 16771 - 18051 (-)
Gene ID: HRGMv2_2882_7_18
Type: TC
Location: 18164 - 19816 (-)
Gene ID: HRGMv2_2882_7_19
Type: TC
Location: 19834 - 21342 (-)
Gene ID: HRGMv2_2882_7_20
Type: pfam
Location: 21469 - 22788 (-)
Gene ID: HRGMv2_2882_7_21
Type: STP
Location: 22980 - 23945 (-)
Gene ID: HRGMv2_2882_7_22
Type: TC
Location: 23932 - 25650 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2882_7_13 vegetarian > vegan 1.65717 0.00364
HRGMv2_2882_7_14 vegetarian > omnivore 1.45482 0.00050

🧭 Explore Read Mapping of CGC

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