Cluster: HRGMv2_2882_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2882
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2882_4 | HRGMv2_2882_4_87 | 95584 | 97257 | + | CBM34 | GH13_20 |
| pfam | HRGMv2_2882_4 | HRGMv2_2882_4_88 | 97261 | 98748 | + | SBP_bac_1 | SBP_bac_8 |
| TC | HRGMv2_2882_4 | HRGMv2_2882_4_89 | 98784 | 100097 | + | 3.A.1.1.27 |
| TC | HRGMv2_2882_4 | HRGMv2_2882_4_90 | 100094 | 100945 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_2882_4 | HRGMv2_2882_4_91 | 100950 | 102470 | + | GH13_36 |
Gene ID: HRGMv2_2882_4_87
Type: CAZyme
Location: 95584 - 97257 (+)
Type: CAZyme
Location: 95584 - 97257 (+)
Gene ID: HRGMv2_2882_4_88
Type: pfam
Location: 97261 - 98748 (+)
Type: pfam
Location: 97261 - 98748 (+)
Gene ID: HRGMv2_2882_4_89
Type: TC
Location: 98784 - 100097 (+)
Type: TC
Location: 98784 - 100097 (+)
Gene ID: HRGMv2_2882_4_90
Type: TC
Location: 100094 - 100945 (+)
Type: TC
Location: 100094 - 100945 (+)
Gene ID: HRGMv2_2882_4_91
Type: CAZyme
Location: 100950 - 102470 (+)
Type: CAZyme
Location: 100950 - 102470 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha intestinigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2882_4_88 | vegetarian > vegan | 1.25979 | 0.00364 |
| HRGMv2_2882_4_89 | vegetarian > vegan | 1.07257 | 0.00364 |
| HRGMv2_2882_4_90 | vegetarian > vegan | 2.01551 | 0.00364 |