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Cluster: HRGMv2_2882_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2882_56 HRGMv2_2882_56_7 5706 7874 - 9.A.8.1.6
TC HRGMv2_2882_56 HRGMv2_2882_56_8 7963 8184 - 9.A.8.1.6
STP HRGMv2_2882_56 HRGMv2_2882_56_9 8171 8407 - FeoA
TF HRGMv2_2882_56 HRGMv2_2882_56_10 8704 9714 + LacI
TC HRGMv2_2882_56 HRGMv2_2882_56_11 9773 11125 + 3.A.1.1.45
TC HRGMv2_2882_56 HRGMv2_2882_56_12 11211 12131 + 3.A.1.1.45
TC HRGMv2_2882_56 HRGMv2_2882_56_13 12128 12982 + 3.A.1.1.45
CAZyme HRGMv2_2882_56 HRGMv2_2882_56_14 13013 14515 + GH77
Gene ID: HRGMv2_2882_56_7
Type: TC
Location: 5706 - 7874 (-)
Gene ID: HRGMv2_2882_56_8
Type: TC
Location: 7963 - 8184 (-)
Gene ID: HRGMv2_2882_56_9
Type: STP
Location: 8171 - 8407 (-)
Gene ID: HRGMv2_2882_56_10
Type: TF
Location: 8704 - 9714 (+)
Gene ID: HRGMv2_2882_56_11
Type: TC
Location: 9773 - 11125 (+)
Gene ID: HRGMv2_2882_56_12
Type: TC
Location: 11211 - 12131 (+)
Gene ID: HRGMv2_2882_56_13
Type: TC
Location: 12128 - 12982 (+)
Gene ID: HRGMv2_2882_56_14
Type: CAZyme
Location: 13013 - 14515 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2882_56_10 vegetarian > vegan 1.34250 0.00364
HRGMv2_2882_56_11 vegetarian > vegan 1.07721 0.00364
HRGMv2_2882_56_14 vegetarian > vegan 1.23985 0.00364

🧭 Explore Read Mapping of CGC

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