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Cluster: HRGMv2_2871_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2871_8 HRGMv2_2871_8_7 9758 10699 + 3.A.1.1.11
TC HRGMv2_2871_8 HRGMv2_2871_8_8 10799 11680 + 3.A.1.1.39
STP HRGMv2_2871_8 HRGMv2_2871_8_9 11697 13772 + TPR_1
pfam HRGMv2_2871_8 HRGMv2_2871_8_10 13788 16346 + DUF5696
TC HRGMv2_2871_8 HRGMv2_2871_8_11 16424 17347 + 3.A.1.1.11
TC HRGMv2_2871_8 HRGMv2_2871_8_12 17365 18288 + 3.A.1.1.36
CAZyme HRGMv2_2871_8 HRGMv2_2871_8_13 18311 19894 + GH32
TC HRGMv2_2871_8 HRGMv2_2871_8_14 19977 21467 - 1.A.13.2.3
NULL(UNKNOWN) HRGMv2_2871_8 HRGMv2_2871_8_15 21543 22145 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2871_8 HRGMv2_2871_8_16 22123 22671 - Sigma70_r2 | Sigma70_r4_2
CAZyme HRGMv2_2871_8 HRGMv2_2871_8_17 23049 23972 - GH43_26
CAZyme HRGMv2_2871_8 HRGMv2_2871_8_18 23990 25123 - GH154
CAZyme HRGMv2_2871_8 HRGMv2_2871_8_19 25128 27572 - GH116
Gene ID: HRGMv2_2871_8_7
Type: TC
Location: 9758 - 10699 (+)
Gene ID: HRGMv2_2871_8_8
Type: TC
Location: 10799 - 11680 (+)
Gene ID: HRGMv2_2871_8_9
Type: STP
Location: 11697 - 13772 (+)
Gene ID: HRGMv2_2871_8_10
Type: pfam
Location: 13788 - 16346 (+)
Gene ID: HRGMv2_2871_8_11
Type: TC
Location: 16424 - 17347 (+)
Gene ID: HRGMv2_2871_8_12
Type: TC
Location: 17365 - 18288 (+)
Gene ID: HRGMv2_2871_8_13
Type: CAZyme
Location: 18311 - 19894 (+)
Gene ID: HRGMv2_2871_8_14
Type: TC
Location: 19977 - 21467 (-)
Gene ID: HRGMv2_2871_8_15
Type:
Location: 21543 - 22145 (-)
Gene ID: HRGMv2_2871_8_16
Type: STP
Location: 22123 - 22671 (-)
Gene ID: HRGMv2_2871_8_17
Type: CAZyme
Location: 23049 - 23972 (-)
Gene ID: HRGMv2_2871_8_18
Type: CAZyme
Location: 23990 - 25123 (-)
Gene ID: HRGMv2_2871_8_19
Type: CAZyme
Location: 25128 - 27572 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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