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Cluster: HRGMv2_2871_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2871_4 HRGMv2_2871_4_49 57867 58724 + 3.A.1.1.39
pfam HRGMv2_2871_4 HRGMv2_2871_4_50 58764 60806 + Yip1
pfam HRGMv2_2871_4 HRGMv2_2871_4_51 60822 63125 + DUF5696
TC HRGMv2_2871_4 HRGMv2_2871_4_52 63118 64023 + 3.A.1.1.25
NULL(UNKNOWN) HRGMv2_2871_4 HRGMv2_2871_4_53 64160 65314 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2871_4 HRGMv2_2871_4_54 65387 67912 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2871_4 HRGMv2_2871_4_55 68051 69037 + 3.A.1.1.11
STP HRGMv2_2871_4 HRGMv2_2871_4_56 69060 70373 + SBP_bac_1
CAZyme HRGMv2_2871_4 HRGMv2_2871_4_57 70394 72061 + GH163
CAZyme HRGMv2_2871_4 HRGMv2_2871_4_58 72220 74133 + GH163
Gene ID: HRGMv2_2871_4_49
Type: TC
Location: 57867 - 58724 (+)
Gene ID: HRGMv2_2871_4_50
Type: pfam
Location: 58764 - 60806 (+)
Gene ID: HRGMv2_2871_4_51
Type: pfam
Location: 60822 - 63125 (+)
Gene ID: HRGMv2_2871_4_52
Type: TC
Location: 63118 - 64023 (+)
Gene ID: HRGMv2_2871_4_53
Type:
Location: 64160 - 65314 (+)
Gene ID: HRGMv2_2871_4_54
Type:
Location: 65387 - 67912 (+)
Gene ID: HRGMv2_2871_4_55
Type: TC
Location: 68051 - 69037 (+)
Gene ID: HRGMv2_2871_4_56
Type: STP
Location: 69060 - 70373 (+)
Gene ID: HRGMv2_2871_4_57
Type: CAZyme
Location: 70394 - 72061 (+)
Gene ID: HRGMv2_2871_4_58
Type: CAZyme
Location: 72220 - 74133 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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