Cluster: HRGMv2_2845_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2845
- CGC Family ID: CGCFAM_00173
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2845_7 | HRGMv2_2845_7_55 | 62329 | 63144 | - | 3.D.6.1.2 |
| TC | HRGMv2_2845_7 | HRGMv2_2845_7_56 | 63157 | 63738 | - | 3.D.6.1.2 |
| TC | HRGMv2_2845_7 | HRGMv2_2845_7_57 | 63738 | 64448 | - | 3.D.6.1.2 |
| TC | HRGMv2_2845_7 | HRGMv2_2845_7_58 | 64462 | 65010 | - | 3.D.6.1.3 |
| TC | HRGMv2_2845_7 | HRGMv2_2845_7_59 | 65003 | 66043 | - | 3.D.6.1.2 |
| TC | HRGMv2_2845_7 | HRGMv2_2845_7_60 | 66043 | 67419 | - | 3.D.6.1.2 |
| TC | HRGMv2_2845_7 | HRGMv2_2845_7_61 | 67747 | 69030 | + | 2.A.1.84.3 |
| CAZyme | HRGMv2_2845_7 | HRGMv2_2845_7_62 | 69024 | 70742 | + | GH2 |
| TC | HRGMv2_2845_7 | HRGMv2_2845_7_63 | 71000 | 71701 | + | 9.B.120.1.3 |
| pfam | HRGMv2_2845_7 | HRGMv2_2845_7_64 | 71701 | 72597 | + | EamA | EamA |
| NULL(UNKNOWN) | HRGMv2_2845_7 | HRGMv2_2845_7_65 | 72599 | 73126 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2845_7 | HRGMv2_2845_7_66 | 73187 | 74119 | + | GH25 |
Gene ID: HRGMv2_2845_7_55
Type: TC
Location: 62329 - 63144 (-)
Type: TC
Location: 62329 - 63144 (-)
Gene ID: HRGMv2_2845_7_56
Type: TC
Location: 63157 - 63738 (-)
Type: TC
Location: 63157 - 63738 (-)
Gene ID: HRGMv2_2845_7_57
Type: TC
Location: 63738 - 64448 (-)
Type: TC
Location: 63738 - 64448 (-)
Gene ID: HRGMv2_2845_7_58
Type: TC
Location: 64462 - 65010 (-)
Type: TC
Location: 64462 - 65010 (-)
Gene ID: HRGMv2_2845_7_59
Type: TC
Location: 65003 - 66043 (-)
Type: TC
Location: 65003 - 66043 (-)
Gene ID: HRGMv2_2845_7_60
Type: TC
Location: 66043 - 67419 (-)
Type: TC
Location: 66043 - 67419 (-)
Gene ID: HRGMv2_2845_7_61
Type: TC
Location: 67747 - 69030 (+)
Type: TC
Location: 67747 - 69030 (+)
Gene ID: HRGMv2_2845_7_62
Type: CAZyme
Location: 69024 - 70742 (+)
Type: CAZyme
Location: 69024 - 70742 (+)
Gene ID: HRGMv2_2845_7_63
Type: TC
Location: 71000 - 71701 (+)
Type: TC
Location: 71000 - 71701 (+)
Gene ID: HRGMv2_2845_7_64
Type: pfam
Location: 71701 - 72597 (+)
Type: pfam
Location: 71701 - 72597 (+)
Gene ID: HRGMv2_2845_7_65
Type:
Location: 72599 - 73126 (+)
Type:
Location: 72599 - 73126 (+)
Gene ID: HRGMv2_2845_7_66
Type: CAZyme
Location: 73187 - 74119 (+)
Type: CAZyme
Location: 73187 - 74119 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2845_7_58 | vegetarian > omnivore | 1.12016 | 0.02624 |
| HRGMv2_2845_7_59 | vegetarian > omnivore | 1.35667 | 0.02624 |
| HRGMv2_2845_7_60 | vegetarian > omnivore | 1.61683 | 0.00289 |
| HRGMv2_2845_7_61 | vegetarian > vegan | 1.79190 | 0.00701 |
| HRGMv2_2845_7_66 | vegetarian > vegan | 1.24669 | 0.00701 |