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Cluster: HRGMv2_2845_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2845_3 HRGMv2_2845_3_5 2598 3599 + 2.A.119.1.3
pfam HRGMv2_2845_3 HRGMv2_2845_3_6 3616 3957 + Thioredoxin_3
pfam HRGMv2_2845_3 HRGMv2_2845_3_7 4004 4834 - Pantoate_transf
TC HRGMv2_2845_3 HRGMv2_2845_3_8 4872 5468 - 2.A.76.1.4
TF HRGMv2_2845_3 HRGMv2_2845_3_9 5609 5965 + PadR
pfam HRGMv2_2845_3 HRGMv2_2845_3_10 5916 6599 + DUF2812
CAZyme HRGMv2_2845_3 HRGMv2_2845_3_11 6710 7954 + GH1
CAZyme HRGMv2_2845_3 HRGMv2_2845_3_12 7917 10244 + GH36
peptidase HRGMv2_2845_3 HRGMv2_2845_3_13 10241 11467 + M20.003
TC HRGMv2_2845_3 HRGMv2_2845_3_14 11470 12834 + 2.A.2.2.1
Gene ID: HRGMv2_2845_3_5
Type: TC
Location: 2598 - 3599 (+)
Gene ID: HRGMv2_2845_3_6
Type: pfam
Location: 3616 - 3957 (+)
Gene ID: HRGMv2_2845_3_7
Type: pfam
Location: 4004 - 4834 (-)
Gene ID: HRGMv2_2845_3_8
Type: TC
Location: 4872 - 5468 (-)
Gene ID: HRGMv2_2845_3_9
Type: TF
Location: 5609 - 5965 (+)
Gene ID: HRGMv2_2845_3_10
Type: pfam
Location: 5916 - 6599 (+)
Gene ID: HRGMv2_2845_3_11
Type: CAZyme
Location: 6710 - 7954 (+)
Gene ID: HRGMv2_2845_3_12
Type: CAZyme
Location: 7917 - 10244 (+)
Gene ID: HRGMv2_2845_3_13
Type: peptidase
Location: 10241 - 11467 (+)
Gene ID: HRGMv2_2845_3_14
Type: TC
Location: 11470 - 12834 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2845_3_7 vegetarian > vegan 2.82208 0.00701
HRGMv2_2845_3_11 vegetarian > vegan 1.62930 0.00701

🧭 Explore Read Mapping of CGC

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