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Cluster: HRGMv2_2845_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2845_2 HRGMv2_2845_2_147 155555 156865 + 2.A.8.1.13
pfam HRGMv2_2845_2 HRGMv2_2845_2_148 156951 157931 + Aldo_ket_red
pfam HRGMv2_2845_2 HRGMv2_2845_2_149 158062 160179 - SLH | MBG_2 | MBG_2 | Flg_new_2
TC HRGMv2_2845_2 HRGMv2_2845_2_150 160212 160784 - 4.A.2.1.24
TF HRGMv2_2845_2 HRGMv2_2845_2_151 160968 161714 + GntR
NULL(UNKNOWN) HRGMv2_2845_2 HRGMv2_2845_2_152 161808 162707 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2845_2 HRGMv2_2845_2_153 164024 165634 - GH5_54
NULL(UNKNOWN) HRGMv2_2845_2 HRGMv2_2845_2_154 165649 165837 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2845_2 HRGMv2_2845_2_155 165869 168901 - GH161
CAZyme HRGMv2_2845_2 HRGMv2_2845_2_156 168903 170246 - GH30_1
CAZyme HRGMv2_2845_2 HRGMv2_2845_2_157 170243 171745 - GH5_46
TC HRGMv2_2845_2 HRGMv2_2845_2_158 171750 172580 - 3.A.1.1.45
TC HRGMv2_2845_2 HRGMv2_2845_2_159 172577 173455 - 3.A.1.1.28
STP HRGMv2_2845_2 HRGMv2_2845_2_160 173520 174812 - SBP_bac_1
TF HRGMv2_2845_2 HRGMv2_2845_2_161 174896 175987 - HTH_AraC | HTH_AraC
TC HRGMv2_2845_2 HRGMv2_2845_2_162 175962 177755 - 8.A.59.2.1
Gene ID: HRGMv2_2845_2_147
Type: TC
Location: 155555 - 156865 (+)
Gene ID: HRGMv2_2845_2_148
Type: pfam
Location: 156951 - 157931 (+)
Gene ID: HRGMv2_2845_2_149
Type: pfam
Location: 158062 - 160179 (-)
Gene ID: HRGMv2_2845_2_150
Type: TC
Location: 160212 - 160784 (-)
Gene ID: HRGMv2_2845_2_151
Type: TF
Location: 160968 - 161714 (+)
Gene ID: HRGMv2_2845_2_152
Type:
Location: 161808 - 162707 (-)
Gene ID: HRGMv2_2845_2_153
Type: CAZyme
Location: 164024 - 165634 (-)
Gene ID: HRGMv2_2845_2_154
Type:
Location: 165649 - 165837 (-)
Gene ID: HRGMv2_2845_2_155
Type: CAZyme
Location: 165869 - 168901 (-)
Gene ID: HRGMv2_2845_2_156
Type: CAZyme
Location: 168903 - 170246 (-)
Gene ID: HRGMv2_2845_2_157
Type: CAZyme
Location: 170243 - 171745 (-)
Gene ID: HRGMv2_2845_2_158
Type: TC
Location: 171750 - 172580 (-)
Gene ID: HRGMv2_2845_2_159
Type: TC
Location: 172577 - 173455 (-)
Gene ID: HRGMv2_2845_2_160
Type: STP
Location: 173520 - 174812 (-)
Gene ID: HRGMv2_2845_2_161
Type: TF
Location: 174896 - 175987 (-)
Gene ID: HRGMv2_2845_2_162
Type: TC
Location: 175962 - 177755 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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