Cluster: HRGMv2_2845_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2845
- CGC Family ID: CGCFAM_04702
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2845_28 | HRGMv2_2845_28_7 | 5692 | 8094 | + | GT35 |
| STP | HRGMv2_2845_28 | HRGMv2_2845_28_8 | 8502 | 10955 | + | SBP_bac_1 |
| STP | HRGMv2_2845_28 | HRGMv2_2845_28_9 | 11023 | 13356 | + | SBP_bac_1 |
| TC | HRGMv2_2845_28 | HRGMv2_2845_28_10 | 13507 | 14421 | + | 3.A.1.1.20 |
| TC | HRGMv2_2845_28 | HRGMv2_2845_28_11 | 14418 | 15305 | + | 3.A.1.1.29 |
Gene ID: HRGMv2_2845_28_7
Type: CAZyme
Location: 5692 - 8094 (+)
Type: CAZyme
Location: 5692 - 8094 (+)
Gene ID: HRGMv2_2845_28_8
Type: STP
Location: 8502 - 10955 (+)
Type: STP
Location: 8502 - 10955 (+)
Gene ID: HRGMv2_2845_28_9
Type: STP
Location: 11023 - 13356 (+)
Type: STP
Location: 11023 - 13356 (+)
Gene ID: HRGMv2_2845_28_10
Type: TC
Location: 13507 - 14421 (+)
Type: TC
Location: 13507 - 14421 (+)
Gene ID: HRGMv2_2845_28_11
Type: TC
Location: 14418 - 15305 (+)
Type: TC
Location: 14418 - 15305 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2845_28_10 | vegetarian > vegan | 1.07351 | 0.00701 |
| HRGMv2_2845_28_11 | vegetarian > vegan | 1.25902 | 0.00701 |