Cluster: HRGMv2_2845_CGC14
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2845
- CGC Family ID: CGCFAM_01602
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2845_17 | HRGMv2_2845_17_8 | 6465 | 9119 | + | GH31_7 |
| pfam | HRGMv2_2845_17 | HRGMv2_2845_17_9 | 9141 | 10952 | + | Glyco_hydro_125 |
| CAZyme | HRGMv2_2845_17 | HRGMv2_2845_17_10 | 10949 | 13135 | + | GH65 |
| pfam | HRGMv2_2845_17 | HRGMv2_2845_17_11 | 13252 | 14763 | + | SBP_bac_8 |
| STP | HRGMv2_2845_17 | HRGMv2_2845_17_12 | 14885 | 17791 | + | SBP_bac_1 |
| TC | HRGMv2_2845_17 | HRGMv2_2845_17_13 | 17788 | 18723 | + | 3.A.1.1.34 |
| TC | HRGMv2_2845_17 | HRGMv2_2845_17_14 | 18723 | 19673 | + | 3.A.1.1.39 |
| pfam | HRGMv2_2845_17 | HRGMv2_2845_17_15 | 19684 | 21750 | + | Yip1 | TPR_16 |
| pfam | HRGMv2_2845_17 | HRGMv2_2845_17_16 | 21737 | 24022 | + | DUF5696 |
| TC | HRGMv2_2845_17 | HRGMv2_2845_17_17 | 24037 | 24942 | + | 3.A.1.1.11 |
| TC | HRGMv2_2845_17 | HRGMv2_2845_17_18 | 24939 | 25877 | + | 3.A.1.1.48 |
| CAZyme | HRGMv2_2845_17 | HRGMv2_2845_17_19 | 25880 | 28582 | + | GH31_7 |
| CAZyme | HRGMv2_2845_17 | HRGMv2_2845_17_20 | 28609 | 31017 | + | GH31_15 |
Gene ID: HRGMv2_2845_17_8
Type: CAZyme
Location: 6465 - 9119 (+)
Type: CAZyme
Location: 6465 - 9119 (+)
Gene ID: HRGMv2_2845_17_9
Type: pfam
Location: 9141 - 10952 (+)
Type: pfam
Location: 9141 - 10952 (+)
Gene ID: HRGMv2_2845_17_10
Type: CAZyme
Location: 10949 - 13135 (+)
Type: CAZyme
Location: 10949 - 13135 (+)
Gene ID: HRGMv2_2845_17_11
Type: pfam
Location: 13252 - 14763 (+)
Type: pfam
Location: 13252 - 14763 (+)
Gene ID: HRGMv2_2845_17_12
Type: STP
Location: 14885 - 17791 (+)
Type: STP
Location: 14885 - 17791 (+)
Gene ID: HRGMv2_2845_17_13
Type: TC
Location: 17788 - 18723 (+)
Type: TC
Location: 17788 - 18723 (+)
Gene ID: HRGMv2_2845_17_14
Type: TC
Location: 18723 - 19673 (+)
Type: TC
Location: 18723 - 19673 (+)
Gene ID: HRGMv2_2845_17_15
Type: pfam
Location: 19684 - 21750 (+)
Type: pfam
Location: 19684 - 21750 (+)
Gene ID: HRGMv2_2845_17_16
Type: pfam
Location: 21737 - 24022 (+)
Type: pfam
Location: 21737 - 24022 (+)
Gene ID: HRGMv2_2845_17_17
Type: TC
Location: 24037 - 24942 (+)
Type: TC
Location: 24037 - 24942 (+)
Gene ID: HRGMv2_2845_17_18
Type: TC
Location: 24939 - 25877 (+)
Type: TC
Location: 24939 - 25877 (+)
Gene ID: HRGMv2_2845_17_19
Type: CAZyme
Location: 25880 - 28582 (+)
Type: CAZyme
Location: 25880 - 28582 (+)
Gene ID: HRGMv2_2845_17_20
Type: CAZyme
Location: 28609 - 31017 (+)
Type: CAZyme
Location: 28609 - 31017 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.