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Cluster: HRGMv2_2845_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2845_9 HRGMv2_2845_9_39 43130 44662 - GH77
TC HRGMv2_2845_9 HRGMv2_2845_9_40 44669 45520 - 3.A.1.1.45
TC HRGMv2_2845_9 HRGMv2_2845_9_41 45520 46440 - 3.A.1.1.45
TC HRGMv2_2845_9 HRGMv2_2845_9_42 46526 47878 - 3.A.1.1.45
TF HRGMv2_2845_9 HRGMv2_2845_9_43 47937 49043 - LacI
STP HRGMv2_2845_9 HRGMv2_2845_9_44 49236 49451 + FeoA
TC HRGMv2_2845_9 HRGMv2_2845_9_45 49468 49689 + 9.A.8.1.6
TC HRGMv2_2845_9 HRGMv2_2845_9_46 49769 51949 + 9.A.8.1.6
Gene ID: HRGMv2_2845_9_39
Type: CAZyme
Location: 43130 - 44662 (-)
Gene ID: HRGMv2_2845_9_40
Type: TC
Location: 44669 - 45520 (-)
Gene ID: HRGMv2_2845_9_41
Type: TC
Location: 45520 - 46440 (-)
Gene ID: HRGMv2_2845_9_42
Type: TC
Location: 46526 - 47878 (-)
Gene ID: HRGMv2_2845_9_43
Type: TF
Location: 47937 - 49043 (-)
Gene ID: HRGMv2_2845_9_44
Type: STP
Location: 49236 - 49451 (+)
Gene ID: HRGMv2_2845_9_45
Type: TC
Location: 49468 - 49689 (+)
Gene ID: HRGMv2_2845_9_46
Type: TC
Location: 49769 - 51949 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2845_9_39 vegetarian > vegan 1.36134 0.00701
HRGMv2_2845_9_42 vegetarian > vegan 1.01580 0.00701
HRGMv2_2845_9_43 vegetarian > vegan 1.65497 0.00701

🧭 Explore Read Mapping of CGC

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