Cluster: HRGMv2_2825_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2825
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2825_12 | HRGMv2_2825_12_10 | 11482 | 12417 | + | 3.A.1.1.23 |
| TC | HRGMv2_2825_12 | HRGMv2_2825_12_11 | 12420 | 13292 | + | 3.A.1.1.36 |
| pfam | HRGMv2_2825_12 | HRGMv2_2825_12_12 | 13302 | 15437 | + | Yip1 |
| pfam | HRGMv2_2825_12 | HRGMv2_2825_12_13 | 15459 | 18515 | + | DUF5696 |
| TC | HRGMv2_2825_12 | HRGMv2_2825_12_14 | 18532 | 19536 | + | 3.A.1.1.11 |
| TC | HRGMv2_2825_12 | HRGMv2_2825_12_15 | 19554 | 20612 | + | 3.A.1.1.41 |
| STP | HRGMv2_2825_12 | HRGMv2_2825_12_16 | 20955 | 22319 | + | Citrate_synt |
| pfam | HRGMv2_2825_12 | HRGMv2_2825_12_17 | 22428 | 23195 | + | GDPD |
| CAZyme | HRGMv2_2825_12 | HRGMv2_2825_12_18 | 23259 | 24245 | + | CE4 |
| TF | HRGMv2_2825_12 | HRGMv2_2825_12_19 | 24311 | 25276 | + | HTH_11 |
| pfam | HRGMv2_2825_12 | HRGMv2_2825_12_20 | 25511 | 26101 | + | TetR_C_33 |
| TC | HRGMv2_2825_12 | HRGMv2_2825_12_21 | 26088 | 26933 | + | 3.A.1.149.1 |
Gene ID: HRGMv2_2825_12_10
Type: TC
Location: 11482 - 12417 (+)
Type: TC
Location: 11482 - 12417 (+)
Gene ID: HRGMv2_2825_12_11
Type: TC
Location: 12420 - 13292 (+)
Type: TC
Location: 12420 - 13292 (+)
Gene ID: HRGMv2_2825_12_12
Type: pfam
Location: 13302 - 15437 (+)
Type: pfam
Location: 13302 - 15437 (+)
Gene ID: HRGMv2_2825_12_13
Type: pfam
Location: 15459 - 18515 (+)
Type: pfam
Location: 15459 - 18515 (+)
Gene ID: HRGMv2_2825_12_14
Type: TC
Location: 18532 - 19536 (+)
Type: TC
Location: 18532 - 19536 (+)
Gene ID: HRGMv2_2825_12_15
Type: TC
Location: 19554 - 20612 (+)
Type: TC
Location: 19554 - 20612 (+)
Gene ID: HRGMv2_2825_12_16
Type: STP
Location: 20955 - 22319 (+)
Type: STP
Location: 20955 - 22319 (+)
Gene ID: HRGMv2_2825_12_17
Type: pfam
Location: 22428 - 23195 (+)
Type: pfam
Location: 22428 - 23195 (+)
Gene ID: HRGMv2_2825_12_18
Type: CAZyme
Location: 23259 - 24245 (+)
Type: CAZyme
Location: 23259 - 24245 (+)
Gene ID: HRGMv2_2825_12_19
Type: TF
Location: 24311 - 25276 (+)
Type: TF
Location: 24311 - 25276 (+)
Gene ID: HRGMv2_2825_12_20
Type: pfam
Location: 25511 - 26101 (+)
Type: pfam
Location: 25511 - 26101 (+)
Gene ID: HRGMv2_2825_12_21
Type: TC
Location: 26088 - 26933 (+)
Type: TC
Location: 26088 - 26933 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS1312
Species
UMGS1312 sp900550625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.