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Cluster: HRGMv2_2819_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2819_16 HRGMv2_2819_16_25 36974 38485 + 3.A.1.2.13
TC HRGMv2_2819_16 HRGMv2_2819_16_26 38487 39452 + 3.A.1.2.21
TC HRGMv2_2819_16 HRGMv2_2819_16_27 39457 40404 + 3.A.1.2.15
STP HRGMv2_2819_16 HRGMv2_2819_16_28 40489 41532 + Peripla_BP_1
pfam HRGMv2_2819_16 HRGMv2_2819_16_29 41594 42364 + adh_short | KR | adh_short_C2 | SDR
CAZyme HRGMv2_2819_16 HRGMv2_2819_16_30 42441 43430 - GT2
pfam HRGMv2_2819_16 HRGMv2_2819_16_31 43639 46227 + GTP_EFTU | EFG_C | EFG_IV | NYN_YacP | EFG_III
TC HRGMv2_2819_16 HRGMv2_2819_16_32 46550 47602 + 2.A.20.1.5
Gene ID: HRGMv2_2819_16_25
Type: TC
Location: 36974 - 38485 (+)
Gene ID: HRGMv2_2819_16_26
Type: TC
Location: 38487 - 39452 (+)
Gene ID: HRGMv2_2819_16_27
Type: TC
Location: 39457 - 40404 (+)
Gene ID: HRGMv2_2819_16_28
Type: STP
Location: 40489 - 41532 (+)
Gene ID: HRGMv2_2819_16_29
Type: pfam
Location: 41594 - 42364 (+)
Gene ID: HRGMv2_2819_16_30
Type: CAZyme
Location: 42441 - 43430 (-)
Gene ID: HRGMv2_2819_16_31
Type: pfam
Location: 43639 - 46227 (+)
Gene ID: HRGMv2_2819_16_32
Type: TC
Location: 46550 - 47602 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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