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Cluster: HRGMv2_2819_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2819_15 HRGMv2_2819_15_2 1109 2044 + 3.A.1.122.6
pfam HRGMv2_2819_15 HRGMv2_2819_15_3 2028 3548 + NPCBM_assoc
TC HRGMv2_2819_15 HRGMv2_2819_15_4 3535 4998 + 3.A.1.122.10
pfam HRGMv2_2819_15 HRGMv2_2819_15_5 5168 5443 + Trns_repr_metal
CAZyme HRGMv2_2819_15 HRGMv2_2819_15_6 5551 7014 - CE4
pfam HRGMv2_2819_15 HRGMv2_2819_15_7 7223 8893 + tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2
pfam HRGMv2_2819_15 HRGMv2_2819_15_8 8945 10399 + tRNA-synt_1c | Anticodon_2
TC HRGMv2_2819_15 HRGMv2_2819_15_9 10497 11192 + 9.B.143.2.3
TC HRGMv2_2819_15 HRGMv2_2819_15_10 11347 14835 + 3.A.1.122.13
Gene ID: HRGMv2_2819_15_2
Type: TC
Location: 1109 - 2044 (+)
Gene ID: HRGMv2_2819_15_3
Type: pfam
Location: 2028 - 3548 (+)
Gene ID: HRGMv2_2819_15_4
Type: TC
Location: 3535 - 4998 (+)
Gene ID: HRGMv2_2819_15_5
Type: pfam
Location: 5168 - 5443 (+)
Gene ID: HRGMv2_2819_15_6
Type: CAZyme
Location: 5551 - 7014 (-)
Gene ID: HRGMv2_2819_15_7
Type: pfam
Location: 7223 - 8893 (+)
Gene ID: HRGMv2_2819_15_8
Type: pfam
Location: 8945 - 10399 (+)
Gene ID: HRGMv2_2819_15_9
Type: TC
Location: 10497 - 11192 (+)
Gene ID: HRGMv2_2819_15_10
Type: TC
Location: 11347 - 14835 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2819_15_5 vegetarian > vegan 1.13131 0.02258

🧭 Explore Read Mapping of CGC

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