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Cluster: HRGMv2_2819_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2819_39 HRGMv2_2819_39_38 39032 40081 + 9.B.18.2.1
pfam HRGMv2_2819_39 HRGMv2_2819_39_39 40127 41260 + Epimerase | Polysacc_synt_C
pfam HRGMv2_2819_39 HRGMv2_2819_39_40 41332 42471 + Epimerase_2
CAZyme HRGMv2_2819_39 HRGMv2_2819_39_41 42568 43806 + GT4
CAZyme HRGMv2_2819_39 HRGMv2_2819_39_42 43831 44550 + GT2
pfam HRGMv2_2819_39 HRGMv2_2819_39_43 44547 44948 + DUF2304
TC HRGMv2_2819_39 HRGMv2_2819_39_44 45024 46496 + 2.A.50.2.1
NULL(UNKNOWN) HRGMv2_2819_39 HRGMv2_2819_39_45 46513 47745 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2819_39 HRGMv2_2819_39_46 47821 49188 - 2.A.35.2.3
Gene ID: HRGMv2_2819_39_38
Type: TC
Location: 39032 - 40081 (+)
Gene ID: HRGMv2_2819_39_39
Type: pfam
Location: 40127 - 41260 (+)
Gene ID: HRGMv2_2819_39_40
Type: pfam
Location: 41332 - 42471 (+)
Gene ID: HRGMv2_2819_39_41
Type: CAZyme
Location: 42568 - 43806 (+)
Gene ID: HRGMv2_2819_39_42
Type: CAZyme
Location: 43831 - 44550 (+)
Gene ID: HRGMv2_2819_39_43
Type: pfam
Location: 44547 - 44948 (+)
Gene ID: HRGMv2_2819_39_44
Type: TC
Location: 45024 - 46496 (+)
Gene ID: HRGMv2_2819_39_45
Type:
Location: 46513 - 47745 (+)
Gene ID: HRGMv2_2819_39_46
Type: TC
Location: 47821 - 49188 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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