Cluster: HRGMv2_2819_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2819
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2819_13 | HRGMv2_2819_13_60 | 41164 | 42345 | + | 2.A.37.3.3 |
| pfam | HRGMv2_2819_13 | HRGMv2_2819_13_61 | 42422 | 43282 | + | Patatin | DUF6363 |
| TC | HRGMv2_2819_13 | HRGMv2_2819_13_62 | 43441 | 44166 | + | 3.A.1.147.6 |
| TC | HRGMv2_2819_13 | HRGMv2_2819_13_63 | 44159 | 45739 | + | 3.A.1.147.6 |
| NULL(UNKNOWN) | HRGMv2_2819_13 | HRGMv2_2819_13_64 | 45754 | 46191 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2819_13 | HRGMv2_2819_13_65 | 46231 | 47487 | + | GT76 |
Gene ID: HRGMv2_2819_13_60
Type: TC
Location: 41164 - 42345 (+)
Type: TC
Location: 41164 - 42345 (+)
Gene ID: HRGMv2_2819_13_61
Type: pfam
Location: 42422 - 43282 (+)
Type: pfam
Location: 42422 - 43282 (+)
Gene ID: HRGMv2_2819_13_62
Type: TC
Location: 43441 - 44166 (+)
Type: TC
Location: 43441 - 44166 (+)
Gene ID: HRGMv2_2819_13_63
Type: TC
Location: 44159 - 45739 (+)
Type: TC
Location: 44159 - 45739 (+)
Gene ID: HRGMv2_2819_13_64
Type:
Location: 45754 - 46191 (+)
Type:
Location: 45754 - 46191 (+)
Gene ID: HRGMv2_2819_13_65
Type: CAZyme
Location: 46231 - 47487 (+)
Type: CAZyme
Location: 46231 - 47487 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruthenibacterium
Species
Ruthenibacterium merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2819_13_61 | vegetarian > vegan | 1.14285 | 0.02258 |
| HRGMv2_2819_13_64 | vegetarian > vegan | 2.65794 | 0.02258 |