Cluster: HRGMv2_2819_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2819
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2819_35 | HRGMv2_2819_35_37 | 39646 | 41037 | + | 3.A.1.19.5 |
| pfam | HRGMv2_2819_35 | HRGMv2_2819_35_38 | 41523 | 42458 | + | CorA |
| CAZyme | HRGMv2_2819_35 | HRGMv2_2819_35_39 | 42789 | 44795 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_2819_35 | HRGMv2_2819_35_40 | 44858 | 46072 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2819_35 | HRGMv2_2819_35_41 | 46066 | 47187 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2819_35 | HRGMv2_2819_35_42 | 47243 | 48667 | + | GT5 |
Gene ID: HRGMv2_2819_35_37
Type: TC
Location: 39646 - 41037 (+)
Type: TC
Location: 39646 - 41037 (+)
Gene ID: HRGMv2_2819_35_38
Type: pfam
Location: 41523 - 42458 (+)
Type: pfam
Location: 41523 - 42458 (+)
Gene ID: HRGMv2_2819_35_39
Type: CAZyme
Location: 42789 - 44795 (+)
Type: CAZyme
Location: 42789 - 44795 (+)
Gene ID: HRGMv2_2819_35_40
Type: pfam
Location: 44858 - 46072 (+)
Type: pfam
Location: 44858 - 46072 (+)
Gene ID: HRGMv2_2819_35_41
Type: pfam
Location: 46066 - 47187 (+)
Type: pfam
Location: 46066 - 47187 (+)
Gene ID: HRGMv2_2819_35_42
Type: CAZyme
Location: 47243 - 48667 (+)
Type: CAZyme
Location: 47243 - 48667 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruthenibacterium
Species
Ruthenibacterium merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.