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Cluster: HRGMv2_2809_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2809_4 HRGMv2_2809_4_93 90352 91398 - 9.B.18.2.1
pfam HRGMv2_2809_4 HRGMv2_2809_4_94 91423 92703 - Polysacc_synt | Polysacc_synt_3
NULL(UNKNOWN) HRGMv2_2809_4 HRGMv2_2809_4_95 92700 93242 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2809_4 HRGMv2_2809_4_96 93214 94419 - GT4
NULL(UNKNOWN) HRGMv2_2809_4 HRGMv2_2809_4_97 94416 95552 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2809_4 HRGMv2_2809_4_98 95560 96768 - GT4
NULL(UNKNOWN) HRGMv2_2809_4 HRGMv2_2809_4_99 96781 97587 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2809_4 HRGMv2_2809_4_100 97608 98906 - GT4
pfam HRGMv2_2809_4 HRGMv2_2809_4_101 99303 100127 - Acyl_transf_3
CAZyme HRGMv2_2809_4 HRGMv2_2809_4_102 100174 101013 - GT2
TC HRGMv2_2809_4 HRGMv2_2809_4_103 101630 102988 - 9.B.18.1.2
TF HRGMv2_2809_4 HRGMv2_2809_4_104 103243 104007 - 0040266
TC HRGMv2_2809_4 HRGMv2_2809_4_105 104148 105497 + 2.A.35.2.3
TC HRGMv2_2809_4 HRGMv2_2809_4_106 105787 107040 + 9.A.40.2.4
TC HRGMv2_2809_4 HRGMv2_2809_4_107 107265 108623 + 2.A.40.2.1
Gene ID: HRGMv2_2809_4_93
Type: TC
Location: 90352 - 91398 (-)
Gene ID: HRGMv2_2809_4_94
Type: pfam
Location: 91423 - 92703 (-)
Gene ID: HRGMv2_2809_4_95
Type:
Location: 92700 - 93242 (-)
Gene ID: HRGMv2_2809_4_96
Type: CAZyme
Location: 93214 - 94419 (-)
Gene ID: HRGMv2_2809_4_97
Type:
Location: 94416 - 95552 (-)
Gene ID: HRGMv2_2809_4_98
Type: CAZyme
Location: 95560 - 96768 (-)
Gene ID: HRGMv2_2809_4_99
Type:
Location: 96781 - 97587 (-)
Gene ID: HRGMv2_2809_4_100
Type: CAZyme
Location: 97608 - 98906 (-)
Gene ID: HRGMv2_2809_4_101
Type: pfam
Location: 99303 - 100127 (-)
Gene ID: HRGMv2_2809_4_102
Type: CAZyme
Location: 100174 - 101013 (-)
Gene ID: HRGMv2_2809_4_103
Type: TC
Location: 101630 - 102988 (-)
Gene ID: HRGMv2_2809_4_104
Type: TF
Location: 103243 - 104007 (-)
Gene ID: HRGMv2_2809_4_105
Type: TC
Location: 104148 - 105497 (+)
Gene ID: HRGMv2_2809_4_106
Type: TC
Location: 105787 - 107040 (+)
Gene ID: HRGMv2_2809_4_107
Type: TC
Location: 107265 - 108623 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2809_4_93 vegan > omnivore 1.04237 0.02772
HRGMv2_2809_4_94 vegetarian > omnivore 1.47770 0.01135
HRGMv2_2809_4_95 vegetarian > omnivore 1.72214 0.01135
HRGMv2_2809_4_96 vegetarian > omnivore 1.75029 0.01135
HRGMv2_2809_4_99 vegetarian > vegan 1.18307 0.00566
HRGMv2_2809_4_99 vegetarian > omnivore 2.21141 0.01135
HRGMv2_2809_4_100 vegetarian > omnivore 1.76515 0.01135
HRGMv2_2809_4_101 vegetarian > omnivore 2.00141 0.01135
HRGMv2_2809_4_102 vegan > omnivore 1.76209 0.02772
HRGMv2_2809_4_105 vegetarian > omnivore 3.64471 0.01135

🧭 Explore Read Mapping of CGC

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