Cluster: HRGMv2_2807_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2807
- CGC Family ID: CGCFAM_00055
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2807_4 | HRGMv2_2807_4_7 | 5978 | 9466 | + | GT2 | GT2 |
| pfam | HRGMv2_2807_4 | HRGMv2_2807_4_8 | 9463 | 11214 | + | Acyl_transf_3 |
| pfam | HRGMv2_2807_4 | HRGMv2_2807_4_9 | 11211 | 11981 | + | ABC2_membrane |
| TC | HRGMv2_2807_4 | HRGMv2_2807_4_10 | 11992 | 12738 | + | 3.A.1.103.5 |
Gene ID: HRGMv2_2807_4_7
Type: CAZyme
Location: 5978 - 9466 (+)
Type: CAZyme
Location: 5978 - 9466 (+)
Gene ID: HRGMv2_2807_4_8
Type: pfam
Location: 9463 - 11214 (+)
Type: pfam
Location: 9463 - 11214 (+)
Gene ID: HRGMv2_2807_4_9
Type: pfam
Location: 11211 - 11981 (+)
Type: pfam
Location: 11211 - 11981 (+)
Gene ID: HRGMv2_2807_4_10
Type: TC
Location: 11992 - 12738 (+)
Type: TC
Location: 11992 - 12738 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp900545495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2807_4_9 | vegetarian > omnivore | 2.11985 | 0.00364 |
| HRGMv2_2807_4_10 | vegetarian > omnivore | 2.79848 | 0.00364 |