Cluster: HRGMv2_2807_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2807
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2807_1 | HRGMv2_2807_1_266 | 274406 | 276298 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_2807_1 | HRGMv2_2807_1_267 | 276295 | 277503 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2807_1 | HRGMv2_2807_1_268 | 277500 | 278612 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2807_1 | HRGMv2_2807_1_269 | 278639 | 280072 | + | GT5 |
| CAZyme | HRGMv2_2807_1 | HRGMv2_2807_1_270 | 280105 | 282522 | + | GT35 |
| TC | HRGMv2_2807_1 | HRGMv2_2807_1_271 | 282611 | 283774 | + | 3.A.18.1.1 |
Gene ID: HRGMv2_2807_1_266
Type: CAZyme
Location: 274406 - 276298 (+)
Type: CAZyme
Location: 274406 - 276298 (+)
Gene ID: HRGMv2_2807_1_267
Type: pfam
Location: 276295 - 277503 (+)
Type: pfam
Location: 276295 - 277503 (+)
Gene ID: HRGMv2_2807_1_268
Type: pfam
Location: 277500 - 278612 (+)
Type: pfam
Location: 277500 - 278612 (+)
Gene ID: HRGMv2_2807_1_269
Type: CAZyme
Location: 278639 - 280072 (+)
Type: CAZyme
Location: 278639 - 280072 (+)
Gene ID: HRGMv2_2807_1_270
Type: CAZyme
Location: 280105 - 282522 (+)
Type: CAZyme
Location: 280105 - 282522 (+)
Gene ID: HRGMv2_2807_1_271
Type: TC
Location: 282611 - 283774 (+)
Type: TC
Location: 282611 - 283774 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp900545495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2807_1_268 | vegetarian > omnivore | 1.06267 | 0.00364 |
| HRGMv2_2807_1_268 | vegetarian > vegan | 1.00521 | 0.00229 |